强光照和黑暗条件下刺参体壁的基因表达差异     

张立斌  冯其明  孙丽娜  房燕  徐冬雪  张涛  杨红生 《海洋学报(英文版)》2018,37(5):54-66

参对光照变化非常敏感，研究刺参对光照的分子响应非常重要。本研究应用RNA测序获取了刺参暴露于强光（“强光”）、正常光照（“对照”）和完全黑暗（“黑暗”）环境下体壁的基因表达谱情况，通过“对照”与“黑暗”，“对照”与“强光”和“黑暗”与“强光”的比较，在|log₂ ratio|≥1和FDR≤0.001的标准下分别发现了1161、113和1705个差异表达基因（DEGs）。基因本体分析表明，“cellular process”和“binding”在“生物过程”和“分子功能”类别中的DEGs富集最多，而“cell”和“cell part”在“细胞组分”类别中的DEGs富集最多。将DEGs与Kyoto Encyclopedia基因和基因组数据库上的于214、41和229条通路进行比对，发现了51、2和57条通路分别显著富集。本研究发现的光特异性DEGs可作为深入研究刺参对光照变化的生化适应机制的重要目标基因。  相似文献   

6-磷酸山梨醇脱氢酶(gutD)基因克隆、测序和表达     

陈启伟  刘广发  邱凤英 《台湾海峡》2004,23(3):314-317

本研究根据6-磷酸山梨醇脱氢酶基因(gutD)两端序列设计引物，以假单胞杆菌(Pseudonmonas XM)的总DNA为模板通过PCR的方法克隆gutD基因并进行序列分析，将克隆得到的gutD基因与原核表达载体pBV220连接并转化大肠杆菌(Escherichia coli)JM101后检测其蛋白表达及菌株生长耐盐性。  相似文献   

Characterization of zebrafish metallothionein gene promoter in a zebrafish caudal fin cell-line,SJD. 1     

Yan CH  Chan KM 《Marine environmental research》2002,54(3-5):335-339

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A cDNA microarray technique applied for analysis of global gene expression profiles in tributyltin-exposed ascidians   总被引：2，自引：0，他引：2  

Azumi K  Fujie M  Usami T  Miki Y  Satoh N 《Marine environmental research》2004,58(2-5):543-546

To analyze global gene expressions, we constructed a cDNA microarray from a basal chordate, the ascidian Ciona intestinalis. Ciona is a cosmopolitan species and a genomic analysis of Ciona revealed that ascidians had approximately 15,500 protein-coding genes. Our "Ciona intestinalis cDNA chip version 1 (Ci cDNA chip ver. 1)" has arrayed 13,400 unique Ciona cDNAs. To establish a detection system for gene expression profiles in wild ascidians using a cDNA microarray, we analyzed gene expressions in the whole body of Ciona adults after exposure to 100 nM tributyltin (TBT) for 24 h. In our preliminary array data using Ci cDNA chip ver. 1, we found more than 200 genes that showed strong differential expressions. These genes encoded proteins that were concerned with stress response, detoxification, oxidoreduction reaction, biosynthesis, and catabolism. This, the first large cDNA microarray of this animal, should facilitate analyses of global gene expressions following exposure to TBT.  相似文献   

沉降监测多项式回归分析与神经网络预测     

田丰  文鸿雁  张静 《海洋测绘》2007,27(4):23-27

使用多项式和切比雪夫(Tchebyshev)多项式分别对沉降监测数据进行回归分析以预测未来沉降值,其中切比雪夫多项式的外推效果较好;应用前向BP神经网络对两种不同的单因子输入模式进行非线性函数逼近,并进行了不同采样步长的比较,实例表明将时间点作为网络的输入对沉降进行预测效果较好。  相似文献   

转兔防御素基因小球藻培养的营养模式研究     

韩兴梅  李元广  魏晓东  李兴武  孙勇如  王义琴 《海洋科学》2006,30(7):48-52

在250mL摇瓶中研究了光自养、异养、混合营养3种营养模式对转兔防御素基因(NP-1)小球藻(Chlorella)的生长、NP-1表达量、总蛋白质含量、pH、葡萄糖消耗以及光衰减等几个方面的影响。结果表明,异养培养为转NP-1基因小球藻的最适营养模式。在此基础上,采用5,15,30L生物反应器补料分批异养培养转NP-1基因小球藻,细胞质量浓度分别达到3.67,4.87,6.39g/L。  相似文献   

3-D rheologic model of earthquake preparation (I)—Displacement field     

宋治平  尹祥础  梅世蓉 《地震学报(英文版)》2003,(6)

Introduction The rock medium shows mainly elastic character under low-temperature, low-pressure and external force for short duration, yet it shows rheologic property under high-temperature, high-pressure and long-time external force. It is reasonable that the rapid earthquake generating process lasted for tens seconds is analyzed by the elastic theory. As for the earthquake generating process for hundreds or thousand years, nevertheless, the rheologic property of rock must be taken into accou…  相似文献   

JRC修正直边法的数学表达   总被引：4，自引：3，他引：4  

杜时贵  陈禹 《工程地质学报》1996,4(2):36-43

JRC是反映爬坡角力学效应的岩体结构面表面形态等效描述指标。本文在爬坡角力学效应机理研究基础上, 阐述了JRC直边法的物理意义；通过岩体结构面表面起伏幅度与金属表面粗糙度幅度对比分析, 肯定了直边法的合理性；考虑JRC的尺寸效应, 推导JRC修正直边法的数学表达式, 编译计算机常用程序。最后, 实例检验了JRC修正直边法数学表达式的合理性和可用性。  相似文献   

土水特征曲线的通用数学模型研究   总被引：13，自引：3，他引：13  

戚国庆  黄润秋 《工程地质学报》2004,12(2):182-186

土水特征曲线对于研究非饱和土的物理力学特性至关重要。根据土水特征曲线可以确定非饱和土的强度、体应变和渗透系数 ,甚至可以确定地下水面以上水份分布。由于土体物理力学特性的差异 ,导致描述其土水特征曲线的数学模型也各不相同。因此 ,建立土水特征曲线的通用数学表达式 ,显得尤为必要。本文对土水特征曲线数学模型进行了研究 ,依据这些模型的数学表达式形式 ,将其划分为 4种类型。分别由这 4种类型的数学模型推导出具有统一表达式形式的土水特征曲线通用数学模型 ,并运用陕北高原黄土土水特征曲线试验数据对通用数学模型进行了研究  相似文献   

Urban stormwater thermal gene expression models for protection of sensitive receiving streams          下载免费PDF全文

A.M.A. Sattar  B. Gharabaghi  F. Sabouri  A.M. Thompson 《水文研究》2017,31(13):2330-2348

Thermal impact of typical high‐density residential, industrial, and commercial land uses is a major concern for the health of aquatic life in urban watersheds, especially in smaller, cold, and cool‐water streams. This is the first study of its kind that provides simple easy‐to‐use equations, developed using gene expression programming (GEP) that can guide the assessment and the design of urban stormwater management systems to protect thermally sensitive receiving streams. We developed 3 GEP models using data collected during 3 years (2009–2011) from 4 urban catchments; the first GEP model predicts event mean temperature at the inlet of the pond; the second model predicts the stormwater temperature at the outlet of the pond; and the third model predicts the temperature of the stormwater after flowing through a cooling trench and before discharging to the receiving stream. The new models have high correlation coefficients of 0.90–0.94 and low prediction uncertainty of less than 4% of the median value of the predicted runoff temperatures. Sensitivity analysis shows that climatic factors have the highest influence on the thermal enrichment followed by the catchment characteristics and the key design variables of the stormwater pond and the cooling trench. The general method presented here is easily transferable to other regions of the world (but not necessarily the exact equations developed here); also through sensitivity and parametric analysis, we gained insight on the key factors and their relative importance in modelling thermal enrichment of urban stromwater runoff.  相似文献