Macroparasites of angelfish Brama brama (Bonnaterre, 1788) in the southern Benguela Current ecosystem     

AL Mackintosh  CC Reed  MAI Nunkoo  PH King  CD van der Lingen 《African Journal of Marine Science》2018,40(3):245-252

The angelfish Brama brama is a mesopelagic species distributed circumglobally in temperate to warm-temperate waters, including continental-shelf-edge and upper-slope waters of the Benguela Current ecosystem. Little is known about the parasite assemblage of Benguela B. brama, with only three parasite taxa having previously been documented from this species in the southern Benguela. This study describes the macroparasites recorded from 35 B. brama collected during research surveys off the west coast of South Africa in 2015 and 2016. A total of six macroparasite taxa were documented, including the nematode Anisakis pegreffii, the copepod Hatschekia conifera, the cestode Hepatoxylon trichiuri, an acanthocephalan from the genus Rhadinorhynchus, a monogenean from the family Diclidophoridae, and an unidentified species. Three of these (He. trichiuri, Rhadinorhynchus sp. and the unidentified species) had not previously been found to infect B. brama. The most prevalent macroparasite taxa were A. pegreffii (94%), the unidentified species (71%) and Ha. conifera (60%). Two of the parasites, Ha. conifera and He. trichiuri, showed seasonal variation in infection, and infection with the latter was positively correlated with host length. These findings increase our knowledge of B. brama biology and contribute to our understanding of the biodiversity of the southern Benguela ecosystem.  相似文献   

MARC: a robust method for multiple-aspect trajectory classification via space,time, and semantic embeddings     

Lucas May Petry  Camila Leite Da Silva  Andrea Esuli  Chiara Renso  Vania Bogorny 《International journal of geographical information science》2020,34(7):1428-1450

ABSTRACT

The increasing popularity of Location-Based Social Networks (LBSNs) and the semantic enrichment of mobility data in several contexts in the last years has led to the generation of large volumes of trajectory data. In contrast to GPS-based trajectories, LBSN and context-aware trajectories are more complex data, having several semantic textual dimensions besides space and time, which may reveal interesting mobility patterns. For instance, people may visit different places or perform different activities depending on the weather conditions. These new semantically rich data, known as multiple-aspect trajectories, pose new challenges in trajectory classification, which is the problem that we address in this paper. Existing methods for trajectory classification cannot deal with the complexity of heterogeneous data dimensions or the sequential aspect that characterizes movement. In this paper we propose MARC, an approach based on attribute embedding and Recurrent Neural Networks (RNNs) for classifying multiple-aspect trajectories, that tackles all trajectory properties: space, time, semantics, and sequence. We highlight that MARC exhibits good performance especially when trajectories are described by several textual/categorical attributes. Experiments performed over four publicly available datasets considering the Trajectory-User Linking (TUL) problem show that MARC outperformed all competitors, with respect to accuracy, precision, recall, and F1-score.  相似文献   

香鱼(Plecoglossus altivelis)脾脏酪氨酸激酶SYK的鉴定及其介导的MAPK信号通路研究     

孙娇  聂力  苗亮  陈炯 《海洋与湖沼》2020,51(5):1182-1193

脾脏酪氨酸激酶(SYK)是一种非受体型酪氨酸激酶(non-receptor tyrosine kinase, NRTK)。在哺乳动物中,SYK是重要的细胞信号通路接头分子,其在免疫细胞活化,胞外刺激的信号转导和病原体识别等多种生命过程中扮演重要角色,然而在鱼类中却鲜有报道。本研究以香鱼(Plecoglossus altivelis)为研究对象,探讨了其SYK(PaSYK)在应对病原微生物感染及在活化免疫信号通路中的作用。我们克隆获得了香鱼SYK的cDNA序列,并利用多重序列比对、构建进化树等生物信息学方法分析PaSYK的进化地位;采用实时荧光定量PCR(RT-qPCR)方法分析PaSYK在健康组织及鳗弧菌(Vibrio anguillarum)感染后的表达变化;亚细胞定位检测PaSYK在HEK293T细胞的分布情况;在香鱼头肾单核/巨噬细胞(Monocyte/macrophage,MO/MΦ)中过表达PaSYK,研究其对炎症细胞因子表达的调控作用并在HEK293T细胞及香鱼头肾MO/MΦ中研究PaSYK对MAPK信号通路的活化作用。多重序列比对结果显示,SYK的蛋白质序列和结构域在进化过程中是高度保守的。系统进化树结果表明, PaSYK与河鳟的亲缘关系密切。RT-qPCR结果表明, SYK基因mRNA在检测的所有组织中均有表达,鳗弧菌感染后免疫相关组织中PaSYK表达量均上调。此外,PaSYK能显著诱导香鱼头肾MO/MΦ中促炎因子TNF-α和IL-1β的表达,但对抑炎因子TGF-β和IL-10的表达起到略微的抑制作用。Western blot结果证明PaSYK可以激活MAPK信号通路。综上所述, SYK分子在进化上高度保守,香鱼SYK与其哺乳动物中的同源物具有保守的功能,均能活化MAPK信号通路并在炎症反应中发挥作用。  相似文献   

超参数对GRU-CNN混合深度学习弹性阻抗反演影响研究     

梁立锋  刘秀娟  张宏兵  陈程浩  陈锦华 《物探与化探》2021,(1):133-139

CNN-GRU混合深度学习反演弹性阻抗取得了较好的反演效果。但是,基于深度学习的叠前反演参数众多,包括内部深度学习网络可学习参数和外部超参数等,目前超参数选取对网络性能及计算速度影响尚缺乏系统性研究,这直接影响到了该方法的进一步推广应用。因此,本文在混合深度学习反演弹性阻抗基础上,探讨学习率、Epoch、batch_size、正则化参数及参与网络训练的测井个数等5个超参数对网络性能及计算速度的影响,为深度学习地震反演超参数选取提供依据。研究结果可为三维大面积深度学习反演提供一个可行的质控手段,对于推动深度学习方法在石油物探中广泛应用具有一定意义。  相似文献   

Machine learning for pore-water pressure time-series prediction: Application of recurrent neural networks     

Xin Wei  Lulu Zhang  Hao-Qing Yang  Limin Zhang  Yang-Ping Yao 《地学前缘(英文版)》2021,12(1):453-467

Knowledge of pore-water pressure(PWP)variation is fundamental for slope stability.A precise prediction of PWP is difficult due to complex physical mechanisms and in situ natural variability.To explore the applicability and advantages of recurrent neural networks(RNNs)on PWP prediction,three variants of RNNs,i.e.,standard RNN,long short-term memory(LSTM)and gated recurrent unit(GRU)are adopted and compared with a traditional static artificial neural network(ANN),i.e.,multi-layer perceptron(MLP).Measurements of rainfall and PWP of representative piezometers from a fully instrumented natural slope in Hong Kong are used to establish the prediction models.The coefficient of determination(R^2)and root mean square error(RMSE)are used for model evaluations.The influence of input time series length on the model performance is investigated.The results reveal that MLP can provide acceptable performance but is not robust.The uncertainty bounds of RMSE of the MLP model range from 0.24 kPa to 1.12 k Pa for the selected two piezometers.The standard RNN can perform better but the robustness is slightly affected when there are significant time lags between PWP changes and rainfall.The GRU and LSTM models can provide more precise and robust predictions than the standard RNN.The effects of the hidden layer structure and the dropout technique are investigated.The single-layer GRU is accurate enough for PWP prediction,whereas a double-layer GRU brings extra time cost with little accuracy improvement.The dropout technique is essential to overfitting prevention and improvement of accuracy.  相似文献   

循环神经网络在雷达临近预报中的应用          下载免费PDF全文

韩丰  龙明盛  李月安  薛峰  王建民 《应用气象学报》2019,30(1):61-69

该文将循环神经网络（recurrent neural network,RNN）应用于雷达临近预报。使用预测循环神经网络（predictive RNN）架构,利用雷达历史组合反射率因子建模,给出雷达组合反射率因子未来1 h的预报结果。预测循环神经网络的核心是在长短时记忆单元（long short-term memory,LSTM）中增加时空记忆模块,能够提取雷达回波不同尺度的空间特征,配合循环神经网络架构,可以有效解决反射率因子预测问题。北京大兴雷达和广州雷达长时间序列的独立检验结果和2个强对流天气个例检验结果表明:该方法和传统的基于交叉相关法的1 h雷达外推临近预报相比,在20 dBZ和30 dBZ检验项目内,临界成功指数（CSI）可以提升0.15~0.30,命中率（POD）提高0.15~0.25,虚警率（FAR）降低0.15~0.20,该方法对反射率因子强度变化有一定预报能力。  相似文献   

刺参染色体制备的初步研究   总被引：2，自引：0，他引：2       下载免费PDF全文

谭杰  孙慧玲  高菲  杨爱国  燕敬平  于东祥  刘志鸿  周丽青 《海洋科学》2011,35(3):8-11

为探索取材容易、结果稳定可靠的刺参染色体制备方法,分别以刺参(Apostichopus japortfcus)胚胎和成体为材料对刺参染色体制片方法进行了研究.结果表明,以原肠后期胚胎为材料采用常规的热滴片法,细胞有丝分裂指数最高,获得分裂相效果最好;以成体呼吸树、成体肠组织为材料时,也能获得中期分裂相染色体,但存在着细...  相似文献   

罗氏沼虾(Macrobrachium rosenbergii)传染性皮下和造血器官坏死病毒(IHHNV)的流行病学调查   总被引：1，自引：0，他引：1  

范东东  魏永伟  苗亮  陈炯 《海洋与湖沼》2015,46(5):1153-1159

传染性皮下和造血器官坏死病毒(infectious hypodermal and hematopoietic necrosis virus,IHHNV)是对虾养殖的重要病原之一,可感染多种虾种。罗氏沼虾(Macrobrachium rosenbergii)是中国养殖的重要沼虾品种之一。根据国际兽疫局(Office International des Epizooties,OIE)推荐的IHHNV检测方法,在中国大陆地区首次开展IHHNV在罗氏沼虾中的感染和流行情况调查。结果显示,在研究区的罗氏沼虾养殖区,IHHNV广泛流行,阳性率高达90%;但所有成年罗氏沼虾均未表现出明显的病症,仅表现为病毒的携带。通过基因序列分析显示,检测到的华南地区毒株属于Ⅰ型感染株,与菲律宾株进化关系较为接近;华东地区毒株属于Ⅱ型感染株,与东南亚株进化关系较近。本研究为IHHNV在罗氏沼虾内的感染、流行和防控提供了详细参考。  相似文献   

不同条件下哈维氏弧菌(Vibrio harvey)对墨吉明对虾(Fenneropenaeus merguiensis)致病性研究     

赵吉臣  王刚  邓中宁  陈兆明  孙成波 《海洋与湖沼》2015,46(6):1413-1419

为研究墨吉明对虾弧菌病的防控方法, 本文通过人工注射感染的方式, 研究不同数量哈维 氏弧菌及在不同温度、盐度、pH、不同硝酸氮、亚硝酸氮和氨氮浓度条件下哈维氏弧菌对墨吉明对 虾的致病性的影响。结果表明: 当人工感染哈维氏弧菌数量为3.16×10⁸ CFU 时, 24 h 内对虾累计死 亡率为96.67%; 哈维氏弧菌数量为3.16×10⁶ CFU 以上, 实验结束时, 对虾累计死亡率都超过了 50.00%.在20-32℃ 范围内, 随着温度升高哈维氏弧菌致病力增强, 并且低温组(20℃ 实验组与 26℃ 实验组)对虾累计死亡率显著低于高温组(32℃ 实验组)(P<0.05).在温度为(24±1)℃ 时, 盐度为 20 时对虾累计死亡率处于较低水平; 在温度为(24±1)℃, 盐度为(22±1)时, 96 h, pH 为8.0 时对虾 累计死亡率最低, 并且与另外两个实验组差异显著(P<0.05); 温度为(24±1)℃, 盐度为(22±1), 硝 酸氮对感染哈维氏弧菌的墨吉明对虾有胁迫作用; 在亚硝酸氮浓度(1.0-10.0 mg/L)、氨氮浓度 (0.5-1.5 mg/L)范围内, 哈维氏弧菌对墨吉明对虾的致病性, 随着浓度升高而增强。本实验为墨吉明 对虾弧菌病的防控提供了理论基础。  相似文献   

一例异育银鲫(Carassius auratus gibelio)暴发性出血病病原分析     

袁雪梅  潘晓艺  郝贵杰  刘莉  吕孙建  蔺凌云  沈锦玉 《海洋与湖沼》2019,50(4):913-920

2016年6月,江苏某异育银鲫(Carassius auratus gibelio)养殖场暴发一种传染性急性出血病,造成养殖银鲫大量死亡。为分析此次疾病病因及流行规律,本研究从发病养殖场采集患出血病的异育银鲫,从细菌、病毒及寄生虫三个方面对病原进行了分析。采用病原菌分离、组织病理学观察、超薄切片电镜观察、病毒核酸分析、回感实验等对病原进行鉴定。结果显示从发病鲫鱼体内分离到病毒一株,未发现寄生虫及细菌感染。经测序及序列分析,该病毒为鲤疱疹病毒Ⅱ型(Cyprinid herpesvirus2,CyHV-2)病毒,组织病理学观察结果显示患病鱼的鳃和肾脏有明显病变,电镜下可观察到病鱼脾脏组织有带囊膜的球形病毒,囊膜直径约为170—200nm,病毒衣壳直径约为110—120nm,核心直径约为60nm,用组织匀浆感染鲫鱼囊胚细胞系(CGB)可稳定地观察到典型的细胞病变,用患病鱼组织匀浆液人工感染异育银鲫的死亡率高达100%,荧光定量PCR检测到该病毒可感染多器官,其中以脾脏中病毒含量最高,其次是脑,肝脏中最少。本研究可为CyHV-2的诊断防控及疫苗研制提供资料。  相似文献