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1.
海水养殖生物病毒病是世界性难题,淋巴囊肿病毒中国分离株(LCDV-cn)是牙鲆(Paralichthys olivaceus)淋巴囊肿病的病原。以mcp基因为靶基因,设计siRNA-mcp1、siRNA-mcp2、siRNA-mcp3等3条siRNA序列,研究RNA干扰(RNAi)对淋巴囊肿病毒在牙鲆体内复制的影响。结果表明,牙鲆体内注入siRNA-mcp1和siRNA-mcp3后,mcp基因的表达有所下调;统计分析表明,注入siRNA-mcp1后,mcp基因的表达下调明显,具有显著性差异(p<0.05),注入siRNA-mcp2、siRNA-mcp3后,mcp基因的表达下调不明显,差异不显著(p>0.05)。本实验中初步实现了RNAi对LCDV-cn复制的抑制作用。 相似文献
2.
两个奥利亚罗非鱼群体热休克蛋白70基因序列比对分析 总被引：1，自引：0，他引：1
采用RACE技术,对两个奥利亚罗非鱼群体(Oreochromis aurea)(美国奥利亚和中国奥利亚)热休克蛋白Hsp70基因完整编码区(code sequences,CDS)cDNA的进行克隆测序。序列分析结果表明:两个奥利亚罗非鱼群体热休克蛋白Hsp70基因CDS序列完全相同,全长1 923 bp,编码640个氨基酸,相对分子质量为70.29×103,理论等电点5.462,均具有Hsp70家族的3个签名序列:IDLGTTYS、IFDLGGGTFD、VVLVGGSTRIPKIQK;核定位信号标签KRKHKKDISQNKRALRR;Dank特征基序DLGTT-S-V;胞质Hsp70特征基序EEVD;靠近C端的GGMP4肽序列;2个糖基化位点NKSI和NVSA。对所得基因序列与已发表的青锵(Oryzias latipes)等物种Hsp70基因的氨基酸序列进行同源性比较,发现两个奥利亚罗非鱼群体与莫桑比克罗非鱼最高99.4%,与牙鲆最低83.9%;系统进化树分析表明奥利亚罗非鱼的Hsp70 cDNA序列与青鳉等物种的Hsp70基因聚在一支,而与牙鲆的Hsp70基因相分离。 相似文献
3.
溶藻弧菌引起海水养殖产业弧菌病的主要病原,附着定植因子基因acfA是溶藻弧菌重要毒力基因之一,其表达产物是溶藻弧菌有效定植在宿主肠道上所必需的蛋白。根据弧菌属细菌acfA基因基因保守区设计引物,采用Touchdown PCR扩增acfA基因部分序列,Inverse PCR和Nested PCR扩增已知序列侧翼序列,成功克隆了溶藻弧菌acfA基因全长。克隆的acfA基因序列全长为743 bp,开放阅读框长度为648 bp组成,共编码215个氨基酸,在5′端上游未发现-35区和-10区序列。演绎的ACFA蛋白N端有18个氨基酸信号肽序列,表明该蛋白是分泌型蛋白;蛋白结构分析表明主要由α螺旋和不规则卷曲构成。BLAST分析表明,该蛋白氨基酸序列与其他弧菌相应蛋白同源性较高,是较保守的外膜蛋白。 相似文献
4.
《广东海洋大学学报》2017,(1)
采用c DNA末端快速扩增技术克隆获得马氏珠母贝清道夫受体基因c DNA全长序列(Pm SR-B);利用荧光定量技术检测Pm SR-B基因在各个组织中的表达量。结果表明,Pm SR-B基因c DNA序列全长1 857 bp,开放阅读框(ORF)长1 443 bp,编码480个氨基酸,5′非翻译区(5′UTR)长89 bp,3′UTR长325 bp。预测其分子质量为54.77 ku,等电点为7.94,脂溶性系数92.94,总平均亲水性-0.120,属于疏水性蛋白;不稳定指数26.37,属于稳定蛋白。氨基酸序列同源比对结果,Pm SR-B氨基酸序列与其他物种具有一定的保守性,与华贵类栉孔扇贝(Mimachlamys nobilis)SR-B的序列的相似度高达47%。荧光定量PCR检测结果,Pm SR-B在肝胰腺中表达量最高,其后依次是鳃、闭壳肌、中央膜,各组织的表达量差异具统计学意义(P0.05)。 相似文献
5.
《广东海洋大学学报》2017,(3)
用同源克隆和RACE的方法克隆红笛鲷(Lutjanus sanguineus)白细胞介素1受体相关激酶1(Interleukin-1receptor-associated kinase 1,IRAK-1)基因的cDNA全序列,并用荧光定量PCR分析其在健康鱼及哈维弧菌感染后红笛鲷的组织表达。结果表明,该序列全长3 207 bp(登录号KF728204),包含5′非编码区(UTR)202 bp,3′UTR752 bp,开放阅读框(ORF)2 253 bp,编码750个氨基酸。根据推导的氨基酸序列预测其蛋白分子质量为82.6 ku,理论等电点为6.59。IRAK-1包含1个N端死亡结构域、proST结构域、中央激酶结构域和C末端结构域。荧光定量PCR分析显示,红笛鲷IRKA-1基因在肝脏和皮肤的表达量最高,其次是心脏、鳃、肌肉和胸腺,其余组织的表达量较低。哈维弧菌侵染红笛鲷后,各组织中IRAK-1基因mRNA表达量均呈上调趋势,肝组织中变化最显著。 相似文献
6.
【目的】克隆马氏珠母贝(Pinctada martensii)肿瘤坏死因子受体相关死亡域蛋白(TRADD)基因,并分析其在各组织中的表达。【方法】利用cDNA末端快速扩增技术(RACE)克隆获得马氏珠母贝PmTRADD基因的c DNA全长序列,利用实时荧光定量PCR(qPCR)方法分析PmTRADD基因在马氏珠母贝不同组织中的表达模式。【结果与结论】PmTRADD包含5′非编码区101 bp,3′非编码区144 bp和开放阅读框(ORF)591 bp,编码196个氨基酸。序列分析表明,PmTRADD没有信号肽和跨膜结构域,C端含有一个死亡结构域(DEATH)。将PmTRADD死亡结构域的氨基酸序列与其他物种的TRADD死亡结构域序列进行比对,发现不同物种的TRADD死亡结构域序列同源性较低。PmTRADD在马氏珠母贝各组织中均有不同程度表达,在鳃组织中表达最高,肝胰腺次之,闭壳肌中基本无表达。 相似文献
7.
李亚 《广东海洋大学学报》2011,(4)
通过绿僵菌属甘露糖6-磷酸异构酶基因保守核苷酸区域设计简并性引物,采用RT-PCR及RACE-PCR技术成功克隆了金龟子绿僵菌mpi基因cDNA序列。该基因cDNA序列全长为1 513 bp,开放阅读框长度为1 328 bp,共编码441氨基酸。BLAST分析发现该基因演绎的氨基酸序列与其它真菌同源性较高,蛋白结构分析表明MPI蛋白是较保守的蛋白磷酸酶结构特征,主要由α螺旋和不规则卷曲构成。 相似文献
8.
《广东海洋大学学报》2015,(3)
采用RACE-PCR克隆卵形鲳鲹(Trachinotus ovatus)肉碱棕榈酰基转移酶Ⅰ(carnitine palmitoyltransferaseⅠ,CPTⅠ)c DNA序列全长,并对其编码氨基酸进行生物信息学分析。结果表明,卵形鲳鲹CPTⅠ基因(Gen Bank登录号KP987456)c DNA序列全长2 841 bp,其开放阅读框(ORF)为2 363 bp,编码787个氨基酸,3'非编码区(URT)335 bp,5'非编码区142 bp;生物信息预测显示CPTⅠ基因编码的蛋白无信号肽序列,脂溶指数高达85.63,亲水性平均值(GRAVY)为-0.213,具有2个跨膜区螺旋,在第312和367氨基酸残基处存在N-糖基化位点,在19个丝氨酸(Ser)、9个苏氨酸(Thr)和14个酪氨酸(Tyr)残基上可能发生磷酸化;二级结构中α螺旋(Alpha helix)占比例最大,为40.66%;该蛋白亚细胞定位预测其主要分布于细胞质和线粒体中;分子系统进化分析显示,卵形鲳鲹CPTⅠ蛋白与花鲈(Lateolabrax japonicas)的同源性最高,达94%,与大黄鱼(Larimichthys crocea)、金鲷(Sparus aurata)的次之,均为93%,与人(Homo sapiens)、鼠(Mus musculus)等的同源性较低(65%)。 相似文献
9.
《广东海洋大学学报》2016,(4)
根据NCBI上登录的溶藻弧菌(Vibrio alginolyticus)全基因组序列,设计一对克隆溶藻弧菌HY9901株Ⅲ型分泌系统"分子尺"蛋白VscP全长基因的特异性引物,PCR扩增获得基因的全长片段。结果显示,vsc P(Gen Bank登录号FR780678)开放阅读框ORF为1 206 bp,共编码401个氨基酸残基。根据推导的氨基酸序列预测其分子质量约为44.4 ku,等电点为5.72。Signal 4.1 Server和TMHMM Server 2.0预测结果表明,VscP无信号肽与跨膜结构域。Soft Berry-Psite预测结果显示,VscP含有3个N端糖基化位点,2个cAMP及c GMP依赖性蛋白激酶磷酸化位点,5个蛋白激酶C磷酸化位点,9个酪蛋白激酶II磷酸化位点,2个N端豆蔻酰基化位点,1个酰胺化位点和3个微体C末端靶信号位点。运用MEGA6.0构建的VscP系统进化树显示,溶藻弧菌VscP与副溶血弧菌(V.parahaemolyticus)聚为一簇。应用SWISS-MODEL软件构建VscP亚基三维结构模型发现,其与鞭毛Fil K蛋白有相似构型。 相似文献
10.
以勒氏笛鲷(Lutjanus russellii)基因组DNA为模板,采用同源克隆的方法,获得2 887 bp的肌肉生长抑制素(myostatin,MSTN)基因组序列,该MSTN序列具有3个外显子和2个内含子,包括101 bp的5′-UTR、385bp的外显子1、354 bp的内含子1、370 bp的外显子2、761 bp的内含子2、381 bp的外显子3和1 932 bp的3′-UTR。整个开放阅读框编码了378个氨基酸,前面的22个氨基酸为信号肽,具有9个保守的半胱氨基酸及一个RVRR的蛋白酶解加工位点。氨基酸序列分析发现,该基因编码的蛋白质与其他鱼类的I型同源性较高,与其他鱼类的2型MSTN同源性较低,且与鲈形目的同源性最高,与鲤形目的同源性较低,与人、鼠和鸡的同源性最低。采用邻接法(Neighbor-Joining)构建的MSTN的系统发育树表明,勒氏笛鲷MSTN与鲈形目鱼类的狼鲈属亲缘关系较近,且与鱼类的MSTN-1聚为1支。这表明该基因属于Ⅰ型MSTN基因。 相似文献
11.
Expression of putative zinc-finger protein lcn61 gene in lymphocystis disease virus China （LCDV-cn） genome 总被引：1，自引：0，他引：1
An open reading frame (lcn61) of lymphocystis disease virus China (LCDV-cn), probably responsible for encoding putative zinc-finger proteins was amplified
and inserted into pET24a (+) vector. Then it expressed in E. coli BL21 (DE3), and His-tag fusion protein of high yield was obtained. It was found that the fusion protein existed in E. coli mainly as inclusion bodies. The bioinformatics analysis indicates that LCN61 is C2H2 type zinc-finger protein containing
four C2H2 zinc-finger motifs. This work provides a theory for functional research of lcn61 gene.
Supported by High Technology Research and Development Program of China (863 Program, No. 2006AA100309) 相似文献
12.
We isolated a strain of lymphocystis disease virus (LCDV) from Japanese flounder (Paralichthys olivaceus) cultured in northern China. Based on published sequences of major capsid protein (MCP) gene of LCDV-cn (GenBank: AF126405),
we designed two primer sets P1/P2 and P3/P4. We then used one-step or nested PCR and in-situ hybridization (ISH) to detect
LCDV and identify the target tissues or cells in infected Japanese flounder. The PCR products were positive in purified viral
supernatant, skin nodules, gut, gill, kidney, spleen, stomach, heart, and liver of Japanese flounder. We compared the DNA
sequence with 14 MCP nucleotide sequences from GenBank, including Megalocytivirus (OFIV and RSIV), Iridovirus (CzIV and WIV), Ranavirus (TFV and FV3), and Lymphocystivirus (8 LCDV). Based on the alignment, we confirmed the PCR product was from Lymphocystivirus (GenBank accession number DQ279090 (LCDV-HD)). Using ISH, we noted the presence of LCDV in the skin nodules, gut, gill, spleen,
stomach, and heart of spontaneously infected Japanese flounders. We successfully amplified LCDV fragments from Schlegel’s
black rockfish (Sebastes schlegeli Higendorf), redwing sea robin (Lepidotrigla microptera Günther) and turbot (Scophthalmus maximus) using the one-step and nested PCR, suggesting the target genes can be widely detected in fish using this method. 相似文献
13.
Lymphocystis disease causes serious economic losses in the fish farming industry. The causative agent of the disease is Lymphocystis disease virus China (LCDV-cn), which has a wide range of hosts. Based on competitive quantitative PCR technology, we established a method to quantify the LCDV-cn in tissue. Results demonstrate that the average amount of LCDV-cn in the peripheral blood of infected flounder with evident tumors is about 106virions/ml while the average amount in those flounder with no evident tumor but cultured with the flounder with evident tumor is about 104virions/ml. No virus was found in the negative samples of flounder. 相似文献
14.
An open reading frame (lcn61) of iymphocystis disease virus China (LCDV-cn), probably responsible for encoding putative zinc-finger proteins was amplified and inserted into pET24a (+) vector.Then it expressed in E. coli BL21 (DE3), and His-tag fusion protein of high yield was obtained. It was found that the fusion protein existed in E. coli mainly as inclusion bodies. The bioinformatics analysis indicates that LCN61 is C2H2 type zinc-finger protein containing four C2H2 zinc-finger motifs. This work provides a theory for functional research of lcn61 gene. 相似文献
15.
SHENG Xiuzhen ZHAN Wenbin XU Songjuan CHENG Shunfeng 《中国海洋大学学报(英文版)》2007,6(4):378-382
Lymphocystis nodules occurring in the cultured sting fish Sebastes schlegeli were observed under light and electron microscope. Lymphocystis disease virus (LCDV) in the tissues of diseased fish was detected with indirect immunofluorescence test (IFAT). Results showed that lymphocystis cells had overly irregular nuclei, basophilic intracytoplasmic inclusion bodies with virions budding from the surface, and hyaline capsules outside the cell membrane. Numerous virus particles about 200 nm in diameter scat- tered in the cytoplasm, electron-dense particles 70-80 nm in diameter filled in perinuclear cisterna, and membrane-enveloped parti- cles with electron-dense core of 70-80 nm appeared around cellular nucleus. IFAT using monoclonal antibody against LCDV from Paralichthys olivaceus revealed that specific green fluorescence was present in the cytoplasm of lymphocystis cells, epithelium of stomach, gill lamellae, and muscular fibers under epidermis of S. schlegeli, just as that in the cytoplasm of lymphocystis cells of P. olivaceus, suggesting the presence of LCDV in these tissues. 相似文献
16.
To reveal the key factor in self-healing from LCDV (lymphocystis disease virus)-infec Japanese flounder (Paralichthys olivaceus), serum proteins from self-healing and sick Japanese floun were separated by two-dimensional electrophoresis to screen differentially expressed proteins. Prot spots demonstrating changes greater than two-fold in the expression level were digested and furt identified in capillary liquid chromatography tandem mass spectrometry (LC-MS/MS). Two immuni relevant proteins were thus identified as transferrin and the complement component C3 of Japan flounder. These findings suggest that the two proteins may play important roles in the self-healing lymphocystis in Japanese flounder. This is an important theoretical foundation to promote self-healing LCDV-infected Japanese flounder by improving their innate immunity. 相似文献
17.
Distribution and expression in vitro and in vivo of DNA vaccine against lymphocystis disease virus in Japanese flounder(Paralichthys olivaceus) 总被引：1，自引：0，他引：1
Lymphocystis disease,caused by the lymphocystis disease virus (LCDV),is a significant worldwide problem in fish industry causing substantial economic losses.In this study,we aimed to develop the DNA vaccine against LCDV,using DNA vaccination technology.We evaluated plasmid pEGFP-N2-LCDV1.3 kb as a DNA vaccine candidate.The plasmid DNA was transiently expressed after liposome transfection into the eukaryotic COS 7 cell line.The distribution and expression of the DNA vaccine (pEGFP-N2-LCDV1.3kb) were also ana... 相似文献
18.
ＩＮＴＲＯＤＵＣＴＩＯＮＴｈｅｒｅｃｅｎｔｙｅａｒｓ’ｒａｐｉｄｄｅｖｅｌｏｐｍｅｎｔｏｆｔｈｅｍａｒｉｎｅｆｉｓｈｃｕｌｔｕｒｅｉｎｄｕｓｔｒｙｉｎＣｈｉｎａｈａｓｂｒｏｕｇｈｔａｂｏｕｔｐｒｏｌｉｆｅｒａｔｉｏｎｏｆｖｉｒａｌｄｉｓｅａｓｅｓｉｎｔｈｅｉｎｄｕｓｔｒｙａｓｓｈｏｗｎｂｙｔｈｅｎｏｔａｂｌｙｆｒｅｑｕｅｎｔｏｃｃｕｒｒｅｎｃｅｏｆｄｉｓｅａｓｅｓｏｒｄｅａｔｈｓｏｆｔｈｅｍａｒｉｃｕｌｔｕｒｅｄｆｉｓｈ .Ｅｌｅｃｔｒｏｎｍｉｃｒｏｓｃｏｐｅｅｘａｍｉｎａｔｉｏｎｏｆｔｈｅａｆｆ… 相似文献
19.
The molecular basis of color polymorphism in the shells of the pearl oyster Pinctada fucata is largely unknown. We developed a red-shelled family line and used suppression subtractive hybridization (SSH) to screen for differentially expressed genes in red- and non-red-shelled pearl oysters. We constructed forward and reverse cDNA subtractive libraries consisting of 2 506 and 797 clones, respectively. Among 343 randomly selected clones in the forward library, 304 sequences were identified in GenBank using BLASTx and BLASTn. Of the 304 sequences, 13 showed no similarity to known sequences and 291 were matched with known genes of the pearl oyster, including shematrin-1, shematrin-2, shematrin-6, shematrin-7, nacrein, nacrein-like protein, aspein for shell matrix protein, glycine-rich protein, mantle gene 5, 28S, EST00031, EST00036, 16S, and COΙ. In the reverse library, 7 clones were sequenced and analyzed by BLAST. Two sequences shared similarity with EST00036 from the P. fucata subtraction cDNA library, four with the P. fucata mitochondrial gene for 16S rRNA and 1 with P. fucata shematrin-2. We evaluated the expression of 12 genes from the forward library using RT PCR. Two sequences matched with 16S and COΙ so were considered to be false positives. The remaining 10 sequences were differentially expression in the red-shelled pearl oysters. Our results suggest that differential expression of these genes may be related to color variation in the red-shelled family line of the pearl oyster. 相似文献
20.
A superoxide dismutase was purified from Enteromorpha linza using a simple and safe procedure, which comprised phosphate buffer extraction, ammonium sulphate precipitation, ion exchange chromatography on Q-sepharose column, and gel filtration chromatography on Superdex 200 10/300GL. The E. linza superoxide dismutase （E/SOD） was purified 103.6-fold, and a yield of 19.1% and a specific activity of 1 750 U/rag protein were obtained. The SDS-PAGE exhibited E/SOD a single band near 23 kDa and the gel filtration study showed E/SOD＇s molecular weight is near 46 kDa in nondenatured condition, indicating it＇s a homodimeric protein. E/SOD is an iron-cofactored superoxide dismutase （Fe-SOD） because it was inhibited by hydrogen peroxide, insensitive to potassium cyanide. The optimal temperature for its maximal enzyme activity was 35℃, and it still had 29.8% relative activity at 0℃, then E/SOD can be classified as a cold-adapted enzyme. E/SOD was stable when temperature was below 40℃ or the pH was within the range of 5 10. The first 11 N-terminal amino acids orE/SOD were ALELKAPPYEL, comparison of its N-terminal sequence with other Fe-SOD N-terminal sequences at the same position suggests it is possibly a chloroplastic Fe-SOD. 相似文献