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1.
This study investigated differences in the community structure and environmental responses of the bacterial community in sediments of the Bohai Sea.Illumina high-throughput sequencing technology and real-time PCR were used to assay the bacterial 16S rRNA genes in the surface sediments of 13 sampling stations in the Bohai Sea.The results showed that sediments at the majority of the 13 sampling stations were contaminated by heavy metal mercury.The main phyla of bacteria recorded included Proteobacteria(52.92%),Bacteroidetes(11.76%),Planctomycetes(7.39%),Acidobacteria(6.53%)and Chloroflexi(4.97%).The genus with the highest relative abundance was Desulfobulbus(4.99%),which was the dominant genus at most sampling stations,followed by Lutimonas and Halioglobus.The main factors influencing bacterial community structure were total organic carbon,followed by depth and total phosphorus.The content of lead,cadmium,chromium,copper and zinc had a consistent effect on community structure.Arsenic showed a negative correlation with bacterial community structure in most samples,while the impact of mercury on community structure was not significant.The bacterial community in sediment samples from the Bohai Sea was rich in diversity and displayed an increase in diversity from high to low latitudes.The data indicated that the Bohai Sea had abundant microbial resources and was rich in bacteria with the potential to metabolize many types of pollutants.  相似文献   

2.
The spatial distribution of ammonia-oxidizing Betaproteobacteria ( β AOB) was investigated by FISH (fluorescence in situ hybridization) and DGGE (denaturing gradient gel electrophoresis) techniques in the sediment off the Changjiang River Estuary.Sediment samples were collected from eight stations in June before the formation of hypoxia zone in 2006.The abundance of β AOB ranged from 1.87 × 10 5 to 3.53 × 10 5 cells/g of sediment.β AOB abundance did not present a negative correlation with salinity,whereas salinity was implicated as the primary factor affecting nitrification rates.The DGGE profiles of PCR-amplified amo A gene fragments revealed that the β AOB community structure of sample S2 separated from other samples at the level of 40% similarity.The variations in composition of β AOB were significantly correlated with the salinity,temperature,absorption ability of sediments and TOC. The statistical analysis indicates that the β AOB abundance was a main factor to influence nitrification rates with an influence ratio of 87.7% at the level of 40% biodiversity similarity.Considering the good correlation between β AOB abundance and nitrification estimates,the abundance and diversity of β AOB community could be expected as an indirect index of nitrification activity at the study sea area in summer.  相似文献   

3.
通过焦磷酸测序揭示北极海水的微生物群落结构   总被引：1，自引：1，他引：0  
This study aimed to determine the microbial community structure of seawater in(ICE-1) and out(FUBIAO) of the pack ice zone in the Arctic region.Approximate 10 L seawater was filtrated by 0.2 μm Whatman nuclepore filters and the environmental genomic DNA was extracted.We conducted a detailed census of microbial communities by pyrosequencing.Analysis of the microbial community structures indicated that these two samples had high bacterial,archaeal and eukaryotic diversity.Proteobacteria and Bacteroidetes were the two dominant members of the bacterioplankton community in both samples,and their relative abundance were 51.29% and 35.39%,72.95%and 23.21%,respectively.Euryarchaeota was the most abundant archaeal phylum,and the relative abundance was nearly up to 100% in FUBIAO and 60% in ICE-1.As for the eukaryotes,no_rank_Eukaryota,Arthropoda and no_rank_Metazoa were the most abundant groups in Sample FUBIAO,accounting for 85.29% of the total reads.The relative abundance of the most abundant phylum in Sample ICE-1,no_rank_Eukaryota and no_rank_Metazoa,was up to 90.69% of the total reads.Alphaproteobacteria,Flavobacteria and Gammaproteobacteria were the top three abundant classes in the two samples at the bacterial class level.There were also differences in the top ten abundant bacterial,archaeal and eukaryotic OTUs at the level of 97% similarity between the two samples.  相似文献   

4.
A depth profile of bacterial community structure in one deep-sea sediment core of the western Pacific ＂warm pool＂ （WP） was investigated and compared with that in a sediment sample from the eastern Pacific （EP） by phylogenetic analysis of 16S rDNA fragments. Five bacterial 16S rDNA clone libraries were constructed, and 133 clones with different restriction fragment length polymorphism （RFLP） patterns were sequenced. A phylogenetic analysis of these sequences revealed that the bacterial diversity in a sample from the WP was more abundant than that in the EP sample. The bacterial population in the sediment core of WP was composed of eight major lineages of the domain bacteria. Among them the γ-Proteobacteria was the predominant and most diverse group in each section of WP sediment core, followed by the α-Proteobacteria. The genus Colwellia belonging to γ-Proteobacteria was predominant in this sample. The shift of bacterial communities among different sections of the WP sediment core was δ-, ε-Proteobacteria, and Cytopahga-Flexibacteria-Bacteroides （CFB） group. The ratios between them in the bacterial communities all showed inversely proportional to the depth of sediment. The sequences related to sulphate reducing bacteria （SRB） were detected in every section. The bacterial community structure in this sediment core might be related to the environmental characteristics of the surface seawater of the western Pacific WP.  相似文献   

5.
The aim of this study is to investigate microbial structures and diversities in five active hydrothermal fields’ sediments along the Eastern Lau Spreading Centre (ELSC) in the Lau Basin (southwest Pacific). Microbial communities were surveyed by denatured gradient gel electrophoresis (DGGE) and clone library analysis of 16S rRNA genes. The differences in microbial community structures among sediment samples from the five deep-sea hydrothermal sites were revealed by DGGE profiles. Cluster analysis of DGGE profiles separated the five hydrothermal samples into two groups. Four different 16S rRNA gene clone libraries, representing two selected hydrothermal samples (19-4TVG8 and 19-4TVG11), were constructed. Twenty-three and 32 phylotypes were identified from 166 and 160 bacterial clones respectively, including Proteobacteria, Bacteroidetes, Firmicutes, Nitrospirae and Planctomycetes. The phylum Proteobacteria is dominant in both bacterial libraries with a predominance of Gamma-Proteobacteria. A total of 31 and 25 phylotypes were obtained from 160 and 130 archaeal clones respectively, including Miscellaneous Crenarchaeotic Group, Marine Group Ⅰ and Ⅲ, Marine Benthic Group E, Terrestrial Hot Spring Crenarchaeota and Deep-sea Hydrothermal Vent Euryarchaeota. These results show a variety of clones related to those involved in sulfur cycling, suggesting that the cycling and utilization of sulfur compounds may extensively occur in the Lau Basin deep-sea hydrothermal ecosystem.  相似文献   

6.
Seasonal variations in zooplankton abundance,biomass,species diversity and community structure were investigated in the Sanmen Bay,China.Samples were collected from 15 stations,on the seasonal basis,in April(spring),July(summer) and October 2005(autumn) and January 2006(winter),respectively.The results show that zooplankton species number,abundance and biomass varied widely and had distinct spatial heterogeneity in the Sanmen Bay.A total of 72 species of zooplankton belonging to 56 genera and 17 groups of pelagic larvae were identified.The zooplankton species richness was strongly related to salinity.Based on hierarchical cluster analysis,zooplankton in this study area were classified into three groups:coastal,neritic and pelagic groups,which corresponded to the upper,middle and lower portion of the Sanmen Bay,respectively.The coastal low-saline species were dominant in the study area.The zooplankton abundance and biomass reached a peak in summer,moderate in spring and autumn,and the lowest in winter.Zooplankton abundance decreased from the upper to lower portion of the bay in April,when the highest biomass occurred in the middle portion of the bay.There were the same spatial distribution patterns for the biomass and abundance in July,with the maximum in the middle of the bay.However,zooplankton abundance was the highest in the middle of the bay in October,when maximum biomass occurred near the lower of the bay.Zooplankton abundance and biomass were evenly distributed in the Sanmen Bay in January.Spatial and temporal variations in zooplankton and their relationship with environmental factors were also analyzed.The BIOENV results indicate that the combination of chlorophyll a(Chl-a),salinity,dissolved inorganic nitrogen(DIN),dissolved oxygen(DO) and silicate(SiO3) was responsible for the variations in zooplankton community structure in the Sanmen Bay.The environmental changes played an important role in changes in the zooplankton community structure in the Sanmen Bay.  相似文献   

7.
Samples were collected with a plankton net in the four seasonal cruises during 2006-2007 to study the seasonal variability of the zooplankton community in the southwest part of Huanghai Sea Cold Water Mass (HSCWM, Yellow Sea Cold Water Mass). The spatial and temporal variations of zooplankton species composition, biomass, abundance and biodiversity were examined. A total of 122 zooplankton species and 30 pelagic larvae were identified in the four cruises. Calanus sinicus and Aidanosagitta crassa were the most dominant species, and Themisto gaudichaudi and Euphausia pacifica were widely distributed in the HSCWM area. The spatial patterns of non-gelatinous zooplankton (removing the high water content groups) were similar to those of the total zooplankton biomass in autumn, but different significantly in the other three seasons. The seasonal means of zooplankton biomass in spring and summer were much higher than that in autumn and winter. The total zooplankton abundance averaged 283.5 ind./m~3 in spring (highest), 192.5 ind./m~3 in summer, 165.5 ind./m~3 in autumn and 65.9 ind./m~3 in winter (lowest), and the non-gelatinous groups contributed the most total abundance. Correlation analysis suggests that the non-gelatinous zooplankton biomass and abundance had a significant positive correlation in the whole year, but the relationship was insignificant between the total zooplankton biomass and abundance in spring and summer. The diversity index H of zooplankton community averaged 1.88 in this study, which was somewhat higher than historical results. Relatively low diversity in summer was related to the high dominance of Calanus sinicus, probably due to the strongest effect of the HSCWM in this season.  相似文献   

8.
北极海洋沉积物细菌和古菌群落结构分析   总被引：2，自引：0，他引：2  
This study was to investigate bacterial and archaeal community structure of pan-Arctic Ocean sediments by pyrosequencing.In total,investigation of three marine sediments revealed 15 002 bacterial and 4 362 archaeal operational taxonomic units(OTUs) at the 97% similarity level.Analysis of community structure indicated that these three samples had high bacterial and archaeal diversity.The most relatively abundant bacterial group in Samples CC1 and R05 was Proteobacteria,while Firmicutes was dominant in Sample BL03.Thaumarchaeota was the most relatively abundant archaeal phylum in Samples CC1 and R05,and the relative abundance of Thaumarchaeota was almost as high as that of Euryarchaeota in Sample BL03.These two phyla accounted for nearly 100% of the archaeal OTUs.δ-Proteobacteria and γ-Proteobacteria were the two most relatively abundant classes at Proteobacterial class level,and their relative abundance was more than 60% in Samples CC1 and R05.There were also differences in the top 10 relatively abundant bacterial and archaeal OTUs among the three samples at the 97% similarity,and only 12 core bacterial OTUs were detected.Overall,this study indicated that there were distinct microbial communities and many unique OTUs in these three samples.  相似文献   

9.
A sediment core MD05-2902 was collected from the deep-sea basin of the Xisha Trough. The vertical distribution and diversity of bacteria in the core was investigated through ten sub-sampling with an interval of 1 m using bacterial 16 S rRNA gene as a phylogenetic bio-marker. Eighteen phylogenetic groups were identified from 16 S rRNA gene clone libraries. The dominant bacterial groups were JS1, Planctomycetes and Chloroflexi, which accounted for 30.6%, 16.6%, and 15.6% of bacterial clones in the libraries, respectively. In order to reveal the relationship between biotic and abiotic data, a nonmetric multidimensional scaling analysis was performed. The result revealed that the δ15N, δ13C, total organic carbon and total organic nitrogen possibly influenced the bacterial community structure. This study expanded our knowledge of the biogeochemical cycling in the Xisha Trough sediment.  相似文献   

10.
The study was conducted during two cruises of June–August 2006 (summer),and January–February 2007 (winter) in the Huanghai (Yellow) Sea and East China Sea.Spatial and temporal variations of zooplankton abundance,biomass and community structure and its relation to currents and water masses over the continental shelf were examined.A total of 584 zooplankton species/taxa and 28 planktonic larvae were identified during the two surveys.Copepods were the most abundant component among these identified groups.Zooplankton abundance and biomass fluctuated widely and showed distinct heterogeneity in the shelf waters.Five zooplankton assemblages were identified with hierarchical cluster analysis during this study,and they were Huanghai Sea Assemblage,Changjiang Estuary Assemblage,Coastal Assemblage,East China Sea Mixed-water Assemblage and East China Sea Offshore Assemblage.Seasonal changes of zooplankton community composition and its geographical distribution were detected,and the locations of the faunistic areas overlap quite well with water masses and current systems.So we suggest that the zooplankton community structure and its changes were determined by the water masses in the Huanghai Sea and East China Sea.The results of this research can provide fundamental information for the long-term monitoring of zooplankton ecology in the shelf of Huanghai Sea and East China Sea.  相似文献   

11.
The first estimates of uptake kinetic parameters for NH4+, NO3−, and urea in the Ross Sea, Antarctica were measured on three cruises during austral late winter–early spring 1996 (pre-bloom), late spring 1997 (bloom development), and summer 1997 (bloom decline). Nitrogen (N) uptake experiments were conducted with water collected at the 50% light penetration depth using trace-metal clean protocols and 15N tracer techniques. At all sites, ambient NO3− concentrations ranged from 5.8 to 30.5 μg-at N l−1 and silicic acid concentrations were greater than 62.0 μg-at Si l−1. The following trends were observed. First, based on maximum uptake rates (Vmax), apparent N utilization followed the order NO3−>NH4+>urea during the pre-bloom and bloom development cruises. During the summer cruise, as the bloom was declining, the apparent order of utilization was NH4+>NO3−>urea. Second, evidence for possible repression of NO3− uptake by elevated NH4+ concentrations was only observed at one site. Third, the kinetic parameters of NH4+ uptake rates corrected for isotope dilution were compared with the kinetic parameters determined from uncorrected rates. In this comparison, the measure of substrate affinity, α (α=Vmax/Ks) increased by an average of 4.6-fold when rates were corrected for isotope dilution, but values of Vmax remained unchanged. Fourth, using bacterial production data, the magnitude of bacterial N uptake was estimated. Assuming that all bacterial N demands were met with NH4+, the estimated bacterial portion of NH4+ uptake ranged from <1%, when the ratio of bacteria to autotrophic biomass was low, to 35%, when bacterial abundance and biomass were highest. Finally, dramatic changes in NH4+ uptake capacity were observed at one station (Stn. O), where kinetic parameters were measured during all three cruises. We hypothesize that a mutualistic relationship exists between phytoplankton and heterotrophic bacteria, and that the creation of microzones of high NH4+ concentrations contributed to the changes seen at this station.  相似文献   

12.
Although environmental factors such as grain size and organic carbon content may influence the distribution of microbes in marine sediments, there has been little experimental study of the topic to date. To investigate how those sediment variables affect microbial colonisation under in situ conditions, deep‐sea sediments and artificial sediments (glass beads, sands) were incubated in the Arctic deep sea at 2500 m water depth with or without chitin, one of the most important carbon polymers in marine environments. Microbial abundance, biomass, chitobiase activity and changes in community structure were monitored after 7 days and 1 year. In control sediments without chitin addition, no significant changes in microbial abundance, biomass and activity were observed after 1 year. In the presence of chitin, however, considerable increases in these parameters were recorded in all three sediment types tested. Regardless of chitin addition, natural deep‐sea sediments were always associated with higher values of microbial abundance, biomass and activity compared with artificial sediments. Sediment type was always found to be the most significant factor explaining variation in enzymatic activity and bacterial community structure as compared to the effects of chitin amount, incubation time, and changes in cell number or biomass. Overall, this is the first in situ study that has addressed the effects of multiple factors and their interactions on abundance, biomass, activity and community structure of microbial communities in the deep Arctic Ocean.  相似文献   

13.
Abstract

Uptake rates of ammonium (NH4 + ), nitrate (NO3 ? ), and urea by three subgroups of phytoplankton (< 200, < 20, < 2 μm) off Westland, were measured using 15 N tracer techniques in midwinter 1988, after a recent upwelling. For all size fractions at surface irradiance (I100), nitrogen (N) was taken up primarily as NO3 ?. This accounted for 67–85% of total N uptake (SρN), whereas at 40 and 7% of surface irradiance, the regenerated N (NH4 + ) and urea) made up 31–72% of SρN. Depth profile experiments for all three size components showed that uptake of NO3 ? was most light‐sensitive, followed by that of NH4 + and urea. The irradiance and nutrient availability plot indicated that light was substantially more important than the nutrient concentrations in controlling the assimilation of N by microplankton (20–200 μm). Nano‐ (2–20 μm) and picoplankton (< 2 μm) however, were not as sensitive to either light or nutrient concentrations. High winds and the resulting deep mixing, combined with offshore and alongshore advection in the midwinter, were suggested to be the major cause of the low biomass and N productivity.  相似文献   

14.
Above- and below-ground productivities and tissue N content were measured monthly to quantify N incorporation to sustain eelgrass growth in Koje Bay on the south coast of Korea from January to December 2002. N acquisition was also estimated through measurements of N uptake kinetics, tissue biomass, and in situ inorganic N concentrations in water column and sediments. Above- and below-ground productivities were highest in summer and lowest in late fall and winter. Leaf tissue N content was highest in December and lowest in July, while rhizome tissue N content was highest in October and lowest in April. Estimated monthly N incorporation by leaf tissues based on the leaf productivity and N content ranged from 0.4 g N m?2 month?1 in November to 2.0 g N m?2 month?1 in May. N incorporation by below-ground tissues ranged from 0.1 g N m?2 month?1 in February to 0.2 g N m?2 month?1 in October. Annual whole plant N incorporation was 14.5 g N m?2 y?1, and N incorporation by leaf tissues accounted for about 87 % of total N incorporation. Maximum uptake rate (V max ) and half saturation constant (K m ) of leaf NH4 + uptake were significantly lower than those of root NH4 + uptake. Above- and below-ground biomass ranged from 20.8 g DW m?2 and 8.6 g DW m?2 in winter to 350.0 g DW m?2 and 81.3 g DW m?2 in spring, respectively. NH4 + concentrations varied from 0.2 to 4.3 mM in water column and from 93.0 to 551.7 mM in sediment pore water. Based on these measurements, annual N acquisition by root tissues contributed slightly higher than that by leaf tissues to total plant N acquisition. During winter, monthly leaf N acquisition was lower than monthly leaf N incorporation. This implies that Z. marina has internal nitrogen retention system to offset the shortage and excess of nitrogen.  相似文献   

15.
Deposit-feeding holothurians often dominate the megafauna in bathyal deep-sea settings, in terms of both abundance and biomass. Molpadia musculus is particularly abundant at about 3400 m depth in the Nazaré Canyon on the NE Atlantic Continental Margin. However, these high abundances are unusual for burrowing species at this depth. The objective of this research was to understand the reasons of the massive occurrence of these molpadiid holothurians in the Nazaré Canyon. To address this question we investigated possible trophic interactions with bacteria at sites where the organic content of the sediment was different (Setúbal and Cascais Canyons, NE Atlantic Continental Margin). The molecular fingerprinting technique of Denaturing Gradient Gel Electrophoresis (DGGE) with band sequencing, combined with non-metric multi-dimensional scaling and statistical analyses, was used to compare the bacterial community diversity in canyon sediments and holothurian gut contents. Our results suggest that M. musculus does not need to develop a specialised gut bacterial community to aid digestion where the sediment is rich in organic matter (Nazaré Canyon); in contrast, such a community may be developed where the sediment is poorer in organic matter (Cascais Canyon).  相似文献   

16.
The number and size of bacteria at four depths (0–1, 5–6, 10–11 and 20–21 cm) in a North Carolina salt marsh were minotored by direct counts for 13 months. The number of bacteria reached a maximum of about 1·4 × 1010 cells cm?3 at the sediment surface in October, corresponding to the period of Spartina alterniflora die-back. Cell numbers were lowest and most consistent throughout the year at the 20 cm depth of sediment. Cell volumes averaged 0·2 μm3 at the marsh surface and decreased with depth. Mean standing crop of bacteria to a depth of 20 cm of sediment was about 14 g bacterial carbon m?2. In surface sediments bacteria contribute up to 15% and algae up to 10% of total living microbial biomass as estimated by adenosine triphosphate (ATP). Bacteria were the major biomass component at sediment depths of 5, 10 and 20 cm. At all depths the microbial community contributes < 4% total organic carbon and < 8% of total nitrogen.  相似文献   

17.
海洋蓝碳是海洋碳汇研究的重要领域,厘清不同蓝碳生境中沉积物有机碳组分格局是当前研究的热点之一。为更好地理解此问题,现以近海厚壳贻贝养殖区这一特殊蓝碳生境为对象,解析沉积物中的碳氮组分格局;进一步通过关联沉积物微生物群落、结合卡尔文循环和还原三羧酸循环的关键基因相对丰度分析,评估厚壳贻贝养殖区沉积物的固碳潜力。结果表明,相较于非养殖区,厚壳贻贝养殖区沉积物惰性碳的累积较大,氮组分主要以氨氮形式存在;同时养殖区高微生物量碳和微生物量氮指示了其沉积物中碳周转较快,碳氮组分特征差异明显。沉积物微生物高通量测序结果显示养殖区沉积物微生物主要以Gamma变形菌纲和Delta变形菌纲为主,且微生物类群与颗粒有机碳、惰性碳等碳组分存在明显的相关性。与惰性碳存在明显正相关关系的硫微螺菌科(Thiomicrospiraceae)丰度在养殖区沉积物中显著高于非养殖区沉积物。贻贝养殖区沉积物包含cbbL在内的6种关键功能基因,固碳潜力明显。研究结果将为进一步探究蓝碳生境的有机碳来源和微生物固碳效率提供基础依据。  相似文献   

18.
Variation in the microbial biomass and community structure found in sediment of heavily polluted bays and the adjacent unpolluted areas were examined using phospholipid fatty acid analysis. Total microbial biomass and microbial community structure were responding to environmental determinants, sediment grain size, depth of sediment, and pollution due to petroleum hydrocarbons. The marker fatty acids of microeukaryotes and prokaryotes - aerobic, anaerobic, and sulfate-reducing bacteria -were detected in sediments of the areas studied. Analysis of the fatty acid profiles revealed wide variations in the community structure in sediments, depending on the extent of pollution, sediment depth, and sediment grain size. The abundance of specific bacterial fatty acids points to the dominance of prokaryotic organisms, whose composition differed among the stations. Fatty acid distributions in sediments suggest the high contribution of aerobic bacteria. Sediments of polluted sites were significantly enriched with anaerobic bacteria in comparison with clean areas. The contribution of this bacterial group increased with the depth of sediments. Anaerobic bacteria were predominantly present in muddy sediments, as evidenced from the fatty acid profiles. Relatively high concentrations of marker fatty acids of sulfate-reducing bacteria were associated with organic pollution in this site. Specific fatty acids of microeukaryotes were more abundant in surface sediments than in deeper sediment layers. Among the microeukaryotes, diatoms were an important component. Significant amounts of bacterial biomass, the predominance of bacterial biomarker fatty acids with abundance of anaerobic and sulfate-reducing bacteria are indicative of a prokaryotic consortium responsive to organic pollution.  相似文献   

19.
为分析凡纳滨对虾（Litopenaeus vannamei）海水养殖过程中水体细菌群落多样性变化,本研究采用Illumina测序技术对福建漳浦县凡纳滨对虾海水养殖中后期水体样品进行16S rRNA基因高通量测序,同时进行水质参数测定。结果表明,养殖过程中,氨氮（NH4+-N）、化学需氧量（COD）值波动较大,其他水质参数值波动较小。检测到的细菌种群归属于19个门、35个纲、80个目、135个科、254个属,说明该养殖水体中细菌群落具有高度的多样性。变形菌门和拟杆菌门是养殖期间主要优势类群,不同养殖时期细菌组成存在一定的波动,但没有明显的变化规律。蓝细菌在第67天、115天表现出高丰度,且其丰度在养殖期间变化较大（比例变化为0.7%~63.9%）。此外,益生菌和潜在致病菌丰度在养殖期间很低。冗余分析（Redundancy analysis,RDA）表明,对细菌群落影响最大的水质因子是化学需氧量与硝酸盐浓度比值（COD/NO3-）和COD;降低溶氧可以增加细菌丰富度。总之,本研究初步揭示了对虾养殖中后期水体微生物的演替规律,发现水质因子对养殖水体微生物组成具有显著影响,研究结果为凡纳滨对虾健康养殖提供一定的参考意义。  相似文献   

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