强光照和黑暗条件下刺参体壁的基因表达差异     

张立斌  冯其明  孙丽娜  房燕  徐冬雪  张涛  杨红生 《海洋学报(英文版)》2018,37(5):54-66

参对光照变化非常敏感,研究刺参对光照的分子响应非常重要。本研究应用RNA测序获取了刺参暴露于强光（“强光”）、正常光照（“对照”）和完全黑暗（“黑暗”）环境下体壁的基因表达谱情况,通过“对照”与“黑暗”,“对照”与“强光”和“黑暗”与“强光”的比较,在|log₂ ratio|≥1和FDR≤0.001的标准下分别发现了1161、113和1705个差异表达基因（DEGs）。基因本体分析表明,“cellular process”和“binding”在“生物过程”和“分子功能”类别中的DEGs富集最多,而“cell”和“cell part”在“细胞组分”类别中的DEGs富集最多。将DEGs与Kyoto Encyclopedia基因和基因组数据库上的于214、41和229条通路进行比对,发现了51、2和57条通路分别显著富集。本研究发现的光特异性DEGs可作为深入研究刺参对光照变化的生化适应机制的重要目标基因。  相似文献   

栉孔扇贝精巢组织细胞的体外培养及特征分析     

房莎  刘丹雯  李茜茜  秦贞奎  张志峰 《海洋通报》2018,(4):424-429

本研究建立了一个栉孔扇贝精巢组织细胞的原代培养体系,鉴定了原代细胞的功能基因表达特征。结果显示,原代培养体系中的精巢细胞以圆形细胞为主,直径为4~11μm,其在体外已存活9个月以上。使用栉孔扇贝vasa基因(生殖细胞标记基因)的地高辛RNA探针和原位杂交技术检测,约98%的原代细胞呈阳性。利用免疫组化技术鉴定了栉孔扇贝SCP3、KLF4、PIWI、C-MYC、SOX9和SOX17在这些细胞中的表达特征,发现这些靶蛋白在精巢原代细胞中的表达特征与栉孔扇贝精巢中的细胞定位基本一致。上述结果表明,本实验所获得的原代细胞以生殖细胞为主,它们保留了栉孔扇贝雄性生殖细胞原有的基因表达特征,可以用于贝类精子发生和性别相关的功能基因研究。  相似文献   

石油烃暴露对栉孔扇贝组织Wnt4基因表达的影响     

任加云  夏江宝  李学平  苗晶晶 《海洋湖沼通报》2018,(5):100-108

采用荧光定量PCR的方法测定了不同浓度石油烃暴露下栉孔扇贝各组织Wnt4基因相对表达量的变化,结果表明,栉孔扇贝各组织Wnt4基因表达量在不同浓度石油烃影响下变化程度具有明显差异,对照组表达量大小顺序为精巢>卵巢>鳃丝>消化盲囊;在浓度为0.1mg·L^-1石油烃影响下,除鳃丝Wnt4基因表达量有上升趋势之外,其余各组织均无显著变化(P>0.05);而在0.3mg·L^-1及以上石油烃浓度组,四种组织Wnt4基因表达量随暴露时间均出现明显上升或者被抑制的现象(P<0.05),各组织Wnt4基因被激活和被抑制的时间和程度均有不同,受石油烃暴露影响的程度为鳃丝>卵巢>精巢>消化盲囊。本研究认为0.3mg·L-1及以上浓度石油烃暴露对栉孔扇贝各组织特别是鳃丝Wnt4基因表达量的影响较大,对栉孔扇贝的生长发育影响明显;各组织Wnt4基因表达量在不同浓度石油烃的影响下呈现一定的规律性,其变化跟各组织解毒指标的变化具有一定相似性,是较好的反映栉孔扇贝在石油烃暴露下其生长发育变化程度的生物学指标。  相似文献   

基于Cyt b基因序列的南海北部蓝圆鲹群体遗传多样性研究          下载免费PDF全文

牛素芳  吴仁协  张丽艳  张浩冉  梁锐  李忠炉 《应用海洋学学报》2018,37(2):263-273

为了解南海北部蓝圆鲹(Decapterus maruadsi)的群体遗传变异特征,本研究利用线粒体DNA Cyt b基因部分序列对9个群体共203个个体进行群体遗传多样性和遗传结构分析.结果显示:在722 bp长的Cyt b部分序列中,共检测出52个多态位点,定义25个单倍型;群体的单倍型多样性(h)为0.577±0.036,核苷酸多样性(π)为0.001 55±0.001 12,整体遗传多样性呈中等偏低水平,其中雷州半岛和海南岛以东5个群体的遗传多样性水平明显高于以西的4个北部湾群体.单倍型系统发育树和网络图均未表现出与地理位置相对应的谱系结构,单倍型网络图呈以主体单倍型为中心的星状结构.群体间的Fst值为-0.077~0.018,且统计检验均不显著(p0.05).分子方差分析(AMOVA)表明,遗传变异全部来源于群体内个体间.Tajima's D值和Fu's Fs值均为显著负值,核苷酸不配对分布呈明显的单峰分布.南海北部蓝圆鲹群体约在29 000a前可能发生过扩张事件,导致遗传多样性呈现高h、低π模式;9个群体间的遗传分化并不显著,符合是一个随机交配种群的假设,但9个群体的遗传多样性水平却表现出明显的地理趋势,提示将南海北部蓝圆鲹作为单一种群进行渔业管理需持谨慎态度.  相似文献   

四株鳖源致病性嗜水气单胞菌(Aeromonas hydrophila)的表型、分子鉴定及其毒力基因检测   总被引：2，自引：0，他引：2  

王志铮  赵蓓蓓  王忠发  申屠琰  陈琼娜 《海洋与湖沼》2010,41(5):776-783

采用生态毒理学、表观分类学及分子生物学方法,对具白底板病典型症状濒死中华鳖内脏中分离获得的4株病原菌开展了以致病性、表型分析、分子鉴定及毒力基因检测为内容的实验研究,结果表明:(1)4株病原菌均具致病性,致死力由大到小依次为ZHYYZ-2、ZHYYZ-4、ZHYYZ-1、ZHYYZ-3;(2)4株病原菌均为呈短杆状、具溶血活性的革兰氏阴性细菌,VITEK2型全自动细菌鉴定与药敏系统和ATBExpression型细菌鉴定与药敏智能系统均显示为嗜水气单胞菌;(3)ZHYYZ-1、ZHYYZ-2、ZHYYZ-3、ZHYYZ-4的16SrDNA序列长度分别为1460、1464、1466、1461,经Blast同源性检索表明它们所扩增的16SrDNA序列与GenBank数据库中登记的71株嗜水气单胞菌的相似性均为99%;(4)经PCR特异性检测,各实验菌均含有Aha、AHH、AerA和OMP。根据4株实验菌的表型和分子生物学特征,判定它们均为气单胞菌属的致病性嗜水气单胞菌。  相似文献   

Origin of transverse folds in an extensional growth-fault setting: Evidence from an extensive seismic volume in the western Gulf of Mexico     

Angela McDonnell  Martin P.A. JacksonMichael R. Hudec 《Marine and Petroleum Geology》2010

Growth faults in gravity-driven extensional provinces are dominated by coast-parallel trends, but coast-perpendicular (transverse) trends are far less documented. The Clemente–Tomas fault in the inner Texas shelf has corrugations that are transverse to the fault and that plunge downdip. A large (8500 km²), high-quality, 3D seismic survey allows a uniquely encompassing perspective into hanging-wall deformation above this corrugated fault surface. Synextensional strata in the hanging wall are folded into alternating transverse ridges and synclines, typically spaced 10 km apart. Forward modelling in dip profiles of an extensional fault having three ramps produces ramp basin-rollover pairs that compare with the seismically revealed ridges and synclines. As they translated down the undulose fault plane, ramp basins and rollovers were juxtaposed along strike, forming the hanging-wall ridges and synclines observed offshore Texas. Fault-surface corrugations correlate broadly with footwall structure. We infer that corrugations on the Clemente–Tomas fault formed by evacuation of an allochthonous salt canopy emplaced in the late Eocene to early Oligocene. Early salt evacuation (Oligocene) created an undulose topography that influenced incipient Clemente-Tomas fault segments as they merged to form an inherently undulose fault. Late salt evacuation (early Miocene) further deformed this fault surface.  相似文献   

凡纳滨对虾C-型凝集素LvLec2 对不同刺激的免疫应答     

罗展  张继泉  李富花  柳承璋  相建海 《海洋科学》2010,34(11):103-110

克隆获得了与中国明对虾(Fenneropenaeus chinensis)C-type lectin 3同源的C-型凝集素LvLec2基因序列,并通过Real-time PCR研究了其在脂多糖(lipopolysaccharide,简称LPS)、灭活溶壁微球菌(Micrococcus lysodeikticus)和白斑综合症病毒(white spot syndrome virus,简称WSSV)刺激后的转录表达变化。结果表明,LvLec2编码157个氨基酸,含有1个糖识别结构域(carbohydrate recognition domain,简称CRD),其CRD结构域中具有决定糖结合特异性的基序"EPS"(Glu118-Pro119-Ser120)序列。系统进化树分析表明LvLec2与已发表的凡纳滨对虾(Litopenaeus vannamei)C-型凝集素亲缘较远。LPS、灭活溶壁微球菌和WSSV刺激后,LvLec2基因在肝胰脏中的转录表达有明显的变化但表达模式不同。LvLec2可能作为模式识别受体参与了对虾对病原的识别或防御。  相似文献   

Effects of Salinity Fluctuation Frequency on the Growth, Molting Rate and Hemolymph 20-Hydroxyecdysone Concentration in Juvenile Chinese shrimp, Fenneropenaeus chinensis     

DING Sen  WANG Fang  SUN Hao  DONG Shuanglin 《中国海洋大学学报(英文版)》2009,8(3)

This experiment was conducted to examine the effects of salinity fluctuation frequency on the growth, molting rate and hemolymph 20-hydroxyecdysone (20-HE) concentration for juvenile Fenneropenaeus chinensis with an initial wet body weight of 1.115 g±0.012 g. The salinity of the control treatment (represented by D0) was 28 throughout the experiment, whereas treatments D2,D4, D6 and D8 were subjected to different salinity fluctuation frequencies of 2, 4, 6 and 8d, respectively. The range of salinity fluctuation was 4. The salinity in treatments D2, D4, D6 and D8 was kept at 28 for 2, 4, 6 and 8d, respectively; each original salinity was decreased abruptly to salinity 24, which first lasted for another 2d and was then raised to its initial value 28. This constituted a salinity fluctuation cycle and afterwards the cycle repeated. It was found that: 1) The weight gain of shrimp in treatment D4 was 202.9% and significantly higher than that in treatment D0 (P<0.05). The molting rate in treatment D2 was the lowest, while that in treatment D6 was the highest and significantly higher than those in treatments D0 and D2 (P<0.05). 2) The hemolymph 20-HE concentration of shrimps in all treatments was at low levels and increased first gradually during the inter-molt period and then increased sharply. It reached a peak value during the pre-molt stage, and then decreased abruptly during the post-molt stage when the lowest level occurred. 3) During the post-molt stage, the hemolymph 20-HE concentration in treatment D2 was 7.47pgμL-1 and significantly higher than that in treatment D0(P<0.05). There were, however, no significant differences in hemolymph 20-HE concentration among all five treatments during the inter-molt stage (P>0.05). During the pre-molt stage, the hemolymph 20-HE concentration in treatment D6 was significantly higher than that in treatment D0(P<0.05), whereas the hemolymph 20-HE concentration in treatment D2 was significantly lower than that in other treatments (P<0.05). Adequate salinity fluctuation promoted the molting rate through increasing hemolymph 20-HE concentration at the pre-molt stage.  相似文献   

Cloning and phylogenetic analysis of a fatty acid elongase gene from Nannochloropsis oculata CS179     

Kehou Pan  Xiaolei Ma  Jianzhong Yu  Baohua Zhu  Guanpin Yang 《中国海洋大学学报(英文版)》2009,8(4):392-398

Nannochloropsis oculata CS179, a unicellular marine microalga, is rich in long-chain polyunsaturated fatty acids (LCPUFAs). Elongase and desaturase play a key role in the biosynthesis of PUFAs. A new elongase gene, which encodes 322 amino acids, was identified via RT-PCR and 5′ and 3′ RACE. The sequence of the elongase gene was blast-searched in the NCBI GenBank and showed a similarity to those of the cryptosporidium. But the NJ-tree revealed that the N. oculata CS179 elongase clustered with those of the microalgae Phaeodactylum tricornutum, Ostreococcus tauri and Thalassiosira pseudonana.  相似文献   

凡纳滨对虾(Litopenaeus vannamei)病原副溶血弧菌(Vibrio parahaemolyticus)的表型及分子特征   总被引：5，自引：0，他引：5  

张晓君  陈翠珍  阎斌伦  房海  秦国民  徐静 《海洋与湖沼》2009,40(5):654-662

采用常规的形态及生理生化特性检验及分子生物学等方法,对引起凡纳滨对虾幼虾发生毁灭性死亡的病原菌进行了致病性、表型生物学及分子生物学的系统研究。结果表明,分离菌为弧菌属(Vibrio Pacini 1954)的副溶血弧菌(Vibrio parahaemolyticus),对凡纳滨对虾、中国对虾及日本对虾仔虾均有强致病性。分离鉴定的4株副溶血弧菌具有淀粉酶、明胶酶、卵磷脂酶活性,但不具有蛋白酶、脂肪酶活性,KP溶血均呈阴性,且均具有K抗原;代表菌株(JGB080708-1株)的16S rRNA基因序列(长度为1456bp,GenBank登录号为GQ205448)和gyrB基因序列(长度为1195bp,GenBank登录号为GQ205453)与副溶血弧菌的两种基因序列相似性均可达98%以上。病原菌的耐药性检测结果显示,对供试49种抗菌药物中的林可霉素等6种药物耐药。  相似文献