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利用限制性最大似然方法和贝叶斯方法估计大菱鲆生长性状的遗传参数。 总被引：1，自引：0，他引：1
Bayesian and restricted maximum likelihood(REML) approaches were used to estimate the genetic parameters in a cultured turbot Scophthalmus maximus stock. The data set consisted of harvest body weight from 2 462progenies(17 months old) from 28 families that were produced through artificial insemination using 39 parent fish. An animal model was applied to partition each weight value into a fixed effect, an additive genetic effect, and a residual effect. The average body weight of each family, which was measured at 110 days post-hatching, was considered as a covariate. For Bayesian analysis, heritability and breeding values were estimated using both the posterior mean and mode from the joint posterior conditional distribution. The results revealed that for additive genetic variance, the posterior mean estimate( δ_a~2=9 320) was highest but with the smallest residual variance,REML estimates( δ_a~2=8 088) came second and the posterior mode estimate( δ_a~2=7 849) was lowest. The corresponding three heritability estimates followed the same trend as additive genetic variance and they were all high. The Pearson correlations between each pair of the three estimates of breeding values were all high,particularly that between the posterior mean and REML estimates(0.996 9). These results reveal that the differences between Bayesian and REML methods in terms of estimation of heritability and breeding values were small. This study provides another feasible method of genetic parameter estimation in selective breeding programs of turbot. 相似文献
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M-Quadtree索引:一种基于改进四叉树编码方法的云存储环境下空间索引方法 总被引：1，自引：0，他引：1
为了解决基于"键-值"模型的云存储环境仅支持简单的关键字查询,不支持多维空间查询的问题,提出了一种新的分布式空间索引方法——M-Quadtree索引。在索引构建过程中,设计了一种基于改进四叉树的空间数据划分方法,该方法规定了叶节点区域的最小数据量,通过四叉树叶节点的再合并,解决了划分后各子区域间存储量不平衡的问题,并且满足了MapReduce并行化要求。给出了MapReduce框架下M-Quadtree索引的快速构建、查询与更新算法,并在搭建的Hadoop平台进行了关键参数对索引效率的影响以及不同规模数据下索引的创建、查询和更新试验。与现有分布式空间索引的对比试验及分析结果表明,M-Quadtree索引在数据存储量负载均衡、算法并行化和空间查询效率等方面表现得更好。 相似文献
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The estimation of genetic parameters has played an important role in animal selective breeding for growth traits.Recently studies show that molecular markers can be incorporated into genetic evaluations. In order to improve the performance of an incomplete pedigree(i.e, only parents are known) in the genetic evaluations, 12 microsatellite markers have been applied in the estimation of the genetic parameters for body weight in a farmed population(n=1 890) of juvenile turbot(Scophthalmus maximus L.). A new relatedness called parental molecular relatedness(PMR) is estimated based on results of genotyping of 48 parents(31 males, 17 females) with microsatellites markers. The feasibility of PMR in estimation of genetic parameters is verified by comparison with pedigree related(PR) which is obtained from a complete pedigree. The results demonstrate that a high correlation(0.872) between them is found. Heritabilities are estimated using the PMR(0.52±0.13) and PR(0.55±0.22) with the same animal model. A cross-validation shows that the predictive abilities of models using the PMR and the PR are identical(0.81). From that, a conclusion can be made that PMR and PR predicted genetic values equally well in a population of juvenile turbot. Therefore PMR can be applied as an alternative of the PR when only parents are known. However, for a better performance, more markers and more families should be included in a further study. 相似文献
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Eight microsatellite markers were used to analyze genetic diversity, level of inbreeding, and effective population size of spawner and recaptured populations of Chinese shrimp(Fenneropenaeus chinensis) during stock enhancement in the Bohai Bay in 2013. A total of 254 and 238 alleles were identified in the spawner and recaptured populations, respectively, and the numbers of alleles(N_a) were 8–63 and 6–60, respectively. The numbers of effective alleles(N_e) were 2.52–21.60 and 2.67–20.72, respectively. The polymorphism information content ranged from 0.529 to 0.952. The observed heterozygosity(H_o) values(0.638–0.910 and 0.712–0.927) were lower than the expected heterozygosity(H_e) values(0.603–0.954 and 0.625–0.952), which indicated that the two populations possessed a rich genetic diversity. In 16 tests(2 populations×8 loci), 13 tests deviated from the HardyWeinberg equilibrium. F_(is) values were positive at seven loci and the inbreeding coefficients(F) of the two populations estimated by trio ML were 13.234% and 11.603%, suggesting that there was a relatively high degree of inbreeding. A certain level of inbreeding depression had occurred in the Chinese shrimp population. F_(st) values ranged from 0 to 0.059, with a mean of 0.028, displaying a low level of genetic differentiation in the two populations. Effective population sizes(3 060.2 and 3 842.8) were higher than the minimum number suggested for retaining the evolutionary potential to adapt to new environmental conditions. For enhancement activity in 2014,the ideal number of captured shrimp spawners should have ranged from 7 686 to 19 214 to maintain genetic diversity and effective population size. Further strategies to adjust the balance of economic cost, fishing effort and ideal number of shrimp spawners to maintain a satisfactory effective population size for ensuring the sustainability of Chinese shrimp are proposed. 相似文献
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本研究估计了大菱鲆收获体重性状的遗传参数和选育遗传进展。数据共包括3个世代（G0，G1，G2）的508个全同胞家系10952尾个体。G0，G1，G2的体重估计遗传力分别为0.11±0.08，0.18±0.09，0.17±0.07；世代间估计遗传力为0.19±0.04。每一世代母本和共同环境效应分别为0.10±0.04，0.14±0.04，0.13±0.03；世代间为0.12±0.01。G0和G1世代选择差分别为,18.24g和21.19g。对应的G1和G2世代的遗传进展为22.06g，11.93g；百分比表示分别为6.36%，3.52%。连续两代选择之后总遗传进展为10.10%。以上结果说明针对大菱鲆体重性状的选育项目是成功的。 相似文献
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为了评估大菱鲆(Scophthalmus maximus)耐氨氮性状的遗传参数和为循环水养殖大菱鲆提供科学指导,作者研究了养殖海水中氨氮对4月龄和8月龄大菱鲆的急性毒性效应,同时对比了氨氮对白化和正常个体、雌性和雄性个体的急性毒性效应差别。结果表明:非离子氨对4月龄大菱鲆的24、48、72、96 h LC50分别为2.19、1.94、1.80、1.72 mg/L,对8月龄大菱鲆的24、48、72、96 h LC50分别为3.64、3.02、2.93、2.86 mg/L,非离子氨对4月龄和8月龄大菱鲆的安全质量浓度分别为0.17和0.29 mg/L;氨氮对白化和正常大菱鲆以及雌性和雄性大菱鲆的急性毒性效应均没有显著性差异,研究结果为进一步选育大菱鲆的耐氨氮品系提供科学依据。 相似文献
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本实验采用40个家系共计954尾大菱鲆(Scophthalmus maximus)为实验材料,应用一般动物模型评估4月龄大菱鲆的耐氨氮性状、体长、体重的遗传力和遗传相关。研究表明,4月龄大菱鲆耐氨氮性状遗传力为0.46±0.20,属于高遗传力,其估计值与0相比达到显著水平(P0.05),具备开展基于表型性状的耐氨氮选育潜力。体长遗传力为0.14±0.22,属于低遗传力;体重遗传力为0.29±0.30,属于中等遗传力;体长和体重遗传力估计值与0相比均未达到显著水平。4月龄大菱鲆耐氨氮性状、体长、体重的相关性分析表明,大菱鲆的耐氨氮性状与体长的遗传相关和表型相关分别为-0.06±0.59和-0.10±0.06;耐氨氮性状与体重的遗传相关和表型相关分别为-0.02±0.48和-0.06±0.06;耐氨氮性状与体长和体重两个性状的相关性非常低,且统计检验均不显著。研究结果表明,以耐氨氮性状为选育指标,不会对大菱鲆的体长和体重产生显著影响。该研究为大菱鲆耐氨氮品种选育提供一定的理论参考。 相似文献
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