强光照和黑暗条件下刺参体壁的基因表达差异     

张立斌  冯其明  孙丽娜  房燕  徐冬雪  张涛  杨红生 《海洋学报(英文版)》2018,37(5):54-66

参对光照变化非常敏感，研究刺参对光照的分子响应非常重要。本研究应用RNA测序获取了刺参暴露于强光（“强光”）、正常光照（“对照”）和完全黑暗（“黑暗”）环境下体壁的基因表达谱情况，通过“对照”与“黑暗”，“对照”与“强光”和“黑暗”与“强光”的比较，在|log₂ ratio|≥1和FDR≤0.001的标准下分别发现了1161、113和1705个差异表达基因（DEGs）。基因本体分析表明，“cellular process”和“binding”在“生物过程”和“分子功能”类别中的DEGs富集最多，而“cell”和“cell part”在“细胞组分”类别中的DEGs富集最多。将DEGs与Kyoto Encyclopedia基因和基因组数据库上的于214、41和229条通路进行比对，发现了51、2和57条通路分别显著富集。本研究发现的光特异性DEGs可作为深入研究刺参对光照变化的生化适应机制的重要目标基因。  相似文献   

Three-dimensional finite element simulation of fracture propagation in rock specimens with pre-existing fissure(s) under compression and their strength analysis     

Ramin Pakzad  Shanyong Wang  Scott W. Sloan 《国际地质力学数值与分析法杂志》2020,44(10):1472-1494

A FORTRAN program, consistent with the commercially available finite element (FE) code ABAQUS, is developed based on a three-dimensional (3D) linear elastic brittle damage constitutive model with two damage criteria. To consider the heterogeneity of rock, the developed FORTRAN program is used to set the stiffness and strength properties of each element of the FE model following a Weibull distribution function. The reliability of the program is assessed against available experimental results for granite cylindrical specimens with a throughgoing, flat and inclined fissure. The calibration procedure of the material parameters is explained in detail, and it is shown that the compressive to tensile strength ratio can have a substantial influence on the failure response of the specimens. Numerical simulations are conducted for models with different levels of heterogeneity. The results show a smaller load bearing capacity for models with less homogeneity, representing gradual coalescence of fully damaged elements forming throughout the models during loading. The maximum load bearing capacity is studied for various combinations of inclination angles of two centrally aligned, throughgoing and flat fissures of equal length embedded in cylindrical models under uniaxial and multiaxial loading conditions. The key role of the compressive to tensile strength ratio is highlighted by repeating certain simulations with a lower compressive to tensile strength ratio. It is proven that the peak loads of the rock models with sufficiently small compressive to tensile strength ratios containing two throughgoing fissures of equal length are similar, provided that the minimum inclination angles of the models are the same. The results are presented and discussed with respect to the existing experimental findings in the literature, suggesting that the numerical model applied in this study can provide useful insight into the failure behaviour of rock-like materials.  相似文献   

Explicit stress–strain equations for modeling frictional materials     

Kenneth J. Xu  Martin D. Liu  Buddhima Indraratna 《Marine Georesources & Geotechnology》2018,36(6):722-734

In this paper, a comprehensive study on simulating the shearing behavior of frictional materials is performed. A set of two explicit equations, describing the relationship among the shear stress ratio and the distortional strain and the volumetric strain, are formulated independently. The equations contain three stress parameters and three strain parameters and another parameter representing the nonuniformity of stress and strain during softening. All the parameters have clear physical significance and can be determined experimentally. It is demonstrated that the proposed equations have the capacity of simulating the complicated shearing behavior of many types of frictional materials including geomaterials. The proposed equations are used to simulate the stress–strain behavior for 27 frictional materials with 98 tests. These materials include soft and stiff clays in both reconstituted and structured states, silicon sands and calcareous sands, silts, compacted fill materials, volcanic soils, decomposed granite soils, cemented soils (both artificially and naturally cemented), partially saturated soils, ballast, rocks, reinforced soils, tire chips, sugar, wheat, and rapeseed. It has been demonstrated that the proposed explicit constitutive equations have the capacity to capture accurately the shearing behavior of frictional materials both qualitatively and quantitatively. A study on model parameters has been performed.  相似文献   

Modelling the poroelastoplastic behaviour of soils subjected to internal erosion by suffusion     

Quentin Rousseau  Giulio Sciarra  Rachel Gelet  Didier Marot 《国际地质力学数值与分析法杂志》2020,44(1):117-136

Granular soils subjected to seepage flow may suffer suffusion, ie, a selective internal erosion. Extending the classical approach of poromechanics, we deduce a new form of the Clausius-Duhem inequality accounting for dissipation due to suffusion, and we deduce restrictions on the constitutive laws of the soil. We suggest (a) a possible coupling between the seepage forces and the suffusion kinetics and (b) an extension of an existing elastoplastic model for the skeleton mechanical behaviour. Numerical integrations of the elastoplastic model are carried out under drained axisymmetric triaxial and oedometric conditions. As a result, we prove that the extended model is able to qualitatively reproduce the suffusion induced strains and the strength reduction experimentally observed. Predictions on the oedometric behaviour of suffusive soils are also provided.  相似文献   

Application of micropolar plasticity to post failure analysis in geomechanics     

Majid T. Manzari 《国际地质力学数值与分析法杂志》2004,28(10):1011-1032

A micropolar elastoplastic model for soils is formulated and a series of finite element analyses are employed to demonstrate the use of a micropolar continuum in overcoming the numerical difficulties encountered in application of finite element method in standard Cauchy–Boltzmann continuum. Three examples of failure analysis involving a deep excavation, shallow foundation, and a retaining wall are presented. In all these cases, it is observed that the length scale introduced in the polar continuum regularizes the incremental boundary value problem and allows the numerical simulation to be continued until a clear collapse mechanism is achieved. The issue of grain size effect is also discussed. Copyright © 2004 John Wiley & Sons, Ltd.  相似文献   

Finite element formulation and algorithms for unsaturated soils. Part II: Verification and application     

Daichao Sheng  David W. Smith  Scott W. Sloan  Antonio Gens 《国际地质力学数值与分析法杂志》2003,27(9):767-790

The finite‐element formulation and integration algorithms developed in Part I are used to analyse a number of practical problems involving unsaturated and saturated soils. The formulation and algorithms perform well for all the cases analysed, with the robustness of the latter being largely insensitive to user‐defined parameters such as the number of coarse time steps and error control tolerances. The efficiency of the algorithms, as measured by the CPU time consumed, does not depend on the number of coarse time steps, but may be influenced by the error control tolerances. Based on the analyses presented here, typical values for the error control tolerances are suggested. It is also shown that the constitutive modelling framework presented in Part I can, by adjusting one constitutive equation and one or two material parameters, be used to simulate soils that expand or collapse upon wetting. Treating the suction as a strain variable instead of a stress variable proves to be an efficient and robust way of solving suction‐dependent plastic yielding. Moreover, the concept of the constitutive stress is a particularly convenient way of handling the transition between saturation and unsaturation. Copyright © 2003 John Wiley & Sons, Ltd.  相似文献   

蛤蜊科3种贝类16SrRNA基因片段及ITS2核苷酸序列分析   总被引：4，自引：0，他引：4  

孟学平高如承  董志国阎斌伦程汉良  李艳杰陈建安 《广东海洋大学学报》2006,26(4):8-13

利用PCR技术分别扩增连云港及启东沿海蛤蜊科的西施舌（Coelomactra antiquata）、中国蛤蜊（Mactra chinensis）和四角蛤蜊（Mactra veneriformis）3种双壳贝的16SrRNA基因片段和ITS2核苷酸序列．测序后用DNAstar软件分析了核苷酸差异。结果显示：三种贝类16SrRNA基因片段长度相同，均为306bp（去除引物）．核苷酸存在多态性。共有45个变异位点，54个核苷酸发生了变异。全部为碱基置换。西施舌与中国蛤蜊此片段核苷酸的同源性为88．9％．与四角蛤蜊的同源性为88．6％．中国蛤蜊与四角蛤蜊的同源性为90．6％。三种蛤蜊ITS2序列分别为390bp（西施舌）、441bp（四角蛤蜊）和466bp（中国蛤蜊）。存在长度多态性．ITS2核苷酸差异分析结果显示．西施舌与中国蛤蜊的同源性为70．9％-71．1％，西施舌与四角蛤蜊的为70．5％-71．0％。中国蛤蜊与四角蛤蜊的同源性为88．1％-88．8％。ITS2序列分析结果与16SrRNA基因片段分析结果一致．2种分子分析法均显示中国蛤蜊与四角蛤蜊的亲缘关系近。  相似文献   

Generalized strain probing of constitutive models     

Youssef M. A. Hashash  Qingwei Fu  Jeremy Butkovich 《国际地质力学数值与分析法杂志》2004,28(15):1503-1519

Advanced material constitutive models are used to describe complex soil behaviour. These models are often used in the solution of boundary value problems under general loading conditions. Users and developers of constitutive models need to methodically investigate the represented soil response under a wide range of loading conditions. This paper presents a systematic procedure for probing constitutive models. A general incremental strain probe, 6D hyperspherical strain probe (HSP), is introduced to examine rate‐independent model response under all possible strain loading conditions. Two special cases of HSP, the true triaxial strain probe (TTSP) and the plane‐strain strain probe (PSSP), are used to generate 3‐D objects that represent model stress response to probing. The TTSP, PSSP and general HSP procedures are demonstrated using elasto‐plastic models. The objects resulting from the probing procedure readily highlight important model characteristics including anisotropy, yielding, hardening, softening and failure. The PSSP procedure is applied to a Neural Network (NN) based constitutive model. It shows that this probing is especially useful in understanding NN constitutive models, which do not contain explicit functions for yield surface, hardening, or anisotropy. Copyright © 2004 John Wiley & Sons, Ltd.  相似文献   

SANICLAY: simple anisotropic clay plasticity model     

Yannis F. Dafalias  Majid T. Manzari  Achilleas G. Papadimitriou 《国际地质力学数值与分析法杂志》2006,30(12):1231-1257

SANICLAY is a new simple anisotropic clay plasticity model that builds on a modification of an earlier model with an associated flow rule, in order to include simulations of softening response under undrained compression following K_o consolidation. Non‐associativity is introduced by adopting a yield surface different than the plastic potential surface. Besides, the isotropic hardening of the yield surface both surfaces evolve according to a combined distortional and rotational hardening rule, simulating the evolving anisotropy. Although built on the general premises of critical state soil mechanics, the model induces a critical state line in the void ratio–mean effective stress space, which is a function of anisotropy. To ease interpretation, the model formulation is presented firstly in the triaxial stress space and subsequently, its multiaxial generalization is developed systematically, in a form appropriate for implementation in numerical codes. The SANICLAY is shown to provide successful simulation of both undrained and drained rate‐independent behaviour of normally consolidated sensitive clays, and to a satisfactory degree of accuracy of overconsolidated clays. The new model requires merely three constants more than those of the modified Cam clay model, all of which are easily calibrated from well‐established laboratory tests following a meticulously presented procedure. Copyright © 2006 John Wiley & Sons, Ltd.  相似文献   

Shear and objective stress rates in hypoplasticity     

D. Kolymbas  I. Herle 《国际地质力学数值与分析法杂志》2003,27(9):733-744

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