程序化设计的简并引物克隆半滑舌鳎CYP17基因   总被引：7，自引：0，他引：7  

陈彩芳  温海深  何峰  董双林 《中国海洋大学学报(自然科学版)》2009,39(6)

采用1种新的简并引物设计方法--CODEHOP法来克隆半滑舌鳎CYP17基因.该法结合NCBI、Blastp、BlockMaker、CODEHOP等生物信息学资源和DNAMAN、Oligo6.0等生物软件,程序性设计半滑舌鳎CYP17基因的CODEHOP引物,从半滑舌鳎卵巢组织中成功克隆了CYP17基因,该基因片段与其它物种的CYP17家族具有较高的同源性,经鉴定,该基因属于整个脊椎动物的CYP17基因群,尤其是鱼类亚群.实验结果表明,程序性设计的简并引物较传统简并引物特异性更高,假阳性率少,更有利于实验成功.  相似文献   

CCD photometry of variable stars in the Magellanic Clouds – VII. The eclipsing binaries MACHO*05:36:48.7−69:17:00 in the LMC, and MOA J005018.4−723855 and J005623.5−722123 in the SMC     

G. P. Bayne  W. Tobin  J. D. Pritchard  K. R. Pollard  M. D. Albrow 《Monthly notices of the Royal Astronomical Society》2004,349(3):833-840

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Screening and molecular classification of low-temperature protease from Antarctic microorganism and its characterization     

王全富缪锦来  侯艳华郑洲 李光友 《极地研究(英文版)》2005,16(2):81-89

107 strains producing protease were screened from 260 strains of Antarctic psychrophilic bacteria, among which proteolytic activity of five strains was more than 45 U ml^-1. The 16S rRNA gcne sequences homology and phylogcnetic analysis of five Antarctic psychrophillc bacteria showed that NJ276, NJS-9, NJ16-70,NJ345 belonged tO the described genus Pseudoalteromonas and NJ341 belonged to the genus Colwellia. The growth and the protease characteristic of four Antarctic psychrophilic bacteria had been studied, and the result showed that the 6ptimal temperature for growth and protease-produeing of four strains was about 10℃. Their growth and protease-produeing were still high during incubatlng 2-5 days. The maximum proteolytic activity occurred at pH 9 for four Antarctic psychrophilic bacteria. The optimal temperature of protease action of both strains NJ276 and NJ5-9 was about 50℃, however, the optimal temperature of protease aetlon of both strains NJ341 and NJ345 was about 40 ℃, and their proteolytic activity under 0℃ exhibited nearly 30% of the maximum activity, but their thermal stabilities were weaker. These results indicated that proteases from NJ341 and NJ345 were low-temperature proteases.  相似文献   

Hydrodynamics of photoionized columns in the Eagle Nebula, M 16     

R.J.R. Williams  D. Ward-Thompson  A.P. Whitworth 《Monthly notices of the Royal Astronomical Society》2001,327(3):788-798

We present hydrodynamical simulations of the formation, structure and evolution of photoionized columns, with parameters based on those observed in the Eagle Nebula. On the basis of these simulations we argue that there is no unequivocal evidence that the dense neutral clumps at heads of the columns were cores in the pre-existing molecular cloud. In our simulations, a variety of initial conditions leads to the formation and maintenance of near-equilibrium columns. Therefore, it is likely that narrow columns will often occur in regions with large-scale inhomogeneities, but that observations of such columns can tell us little about the processes by which they formed. The manner in which the columns in our simulations develop suggests that their evolution may result in extended sequences of radiation-induced star formation.  相似文献   

Effect of NOAA satellite orbital drift on AVHRR-derived phenological metrics     

《International Journal of Applied Earth Observation and Geoinformation》2017

The U.S. Geological Survey (USGS) Earth Resources Observation and Science (EROS) Center routinely produces and distributes a remote sensing phenology (RSP) dataset derived from the Advanced Very High Resolution Radiometer (AVHRR) 1-km data compiled from a series of National Oceanic and Atmospheric Administration (NOAA) satellites (NOAA-11, −14, −16, −17, −18, and −19). Each NOAA satellite experienced orbital drift during its duty period, which influenced the AVHRR reflectance measurements. To understand the effect of the orbital drift on the AVHRR-derived RSP dataset, we analyzed the impact of solar zenith angle (SZA) on the RSP metrics in the conterminous United States (CONUS). The AVHRR weekly composites were used to calculate the growing-season median SZA at the pixel level for each year from 1989 to 2014. The results showed that the SZA increased towards the end of each NOAA satellite mission with the highest increasing rate occurring during NOAA-11 (1989–1994) and NOAA-14 (1995–2000) missions. The growing-season median SZA values (44°–60°) in 1992, 1993, 1994, 1999, and 2000 were substantially higher than those in other years (28°–40°). The high SZA in those years caused negative trends in the SZA time series, that were statistically significant (at α = 0.05 level) in 76.9% of the CONUS area. A pixel-based temporal correlation analysis showed that the phenological metrics and SZA were significantly correlated (at α = 0.05 level) in 4.1–20.4% of the CONUS area. After excluding the 5 years with high SZA (>40°) from the analysis, the temporal SZA trend was largely reduced, significantly affecting less than 2% of the study area. Additionally, significant correlation between the phenological metrics and SZA was observed in less than 7% of the study area. Our study concluded that the NOAA satellite orbital drift increased SZA, and in turn, influenced the phenological metrics. Elimination of the years with high median SZA reduced the influence of orbital drift on the RSP time series.  相似文献   

The use of MODIS data to derive acreage estimations for larger fields: A case study in the south-western Rostov region of Russia     

S. Fritz  M. Massart  I. Savin  J. Gallego  F. Rembold   《International Journal of Applied Earth Observation and Geoinformation》2008,10(4):453

Recent developments in remote sensing technology, in particular improved spatial and temporal resolution, open new possibilities for estimating crop acreage over larger areas. Remotely sensed data allow in some cases the estimation of crop acreage statistics independently of sub-national survey statistics, which are sometimes biased and incomplete. This work focuses on the use of MODIS data acquired in 2001/2002 over the Rostov Oblast in Russia, by the Azov Sea. The region is characterised by large agricultural fields of around 75 ha on average. This paper presents a methodology to estimate crop acreage using the MODIS 16-day composite NDVI product. Particular emphasis is placed on a good quality crop mask and a good quality validation dataset. In order to have a second dataset which can be used for cross-checking the MODIS classification a Landsat ETM time series for four different dates in the season of 2002 was acquired and classified. We attempted to distinguish five different crop types and achieved satisfactory and good results for winter crops. Three hundred and sixty fields were identified to be suitable for the training and validation of the MODIS classification using a maximum likelihood classification. A novel method based on a pure pixel field sampling is introduced. This novel method is compared with the traditional hard classification of mixed pixels and was found to be superior.  相似文献   

基于第二代测序技术的条斑紫菜(Pyropia yezoensis)贝壳丝状体附生菌群研究   总被引：1，自引：0，他引：1  

盖珊珊  张伟东 《海洋与湖沼》2016,47(5):990-996

条斑紫菜(Pyropia yezoensis)贝壳丝状体黄斑病给育苗产业造成危害,但目前对健康状态下的菌群结构及其发病后变化仍缺乏认识。本研究基于第二代测序技术和16S r RNA序列分析,对健康和患病丝状体的细菌组成与变化进行比较。测序共产生1.6Gb配对末端序列,获得了第一个高通量的条斑紫菜贝壳丝状体细菌群落数据集。通过数据分析共识别出7,833种可操作分类单元(operational taxonomic units,OTUs),比对确定为18个细菌门。相对于健康样本,黄斑病丝状体样本的微生物多样性显著增加。主坐标分析和非加权组平均法(unweighted pair group method using arithmetic average,UPGMA)聚类均将健康和黄斑病丝状体分成不同的组,且健康组样本间的距离明显小于黄斑病组。上述结果说明,健康贝壳丝状体保持着相似的微生物群落结构,而患病后的丝状体则发生了不同的变化;健康样本和黄斑病样本组间差异显著的细菌属有39个,其中29个在健康样本中的相对丰度明显高于病患组样本。本研究从菌群生态角度分析了健康贝壳丝状体微生物菌群结构、发病后菌群的变化及其对丝状体生长的潜在作用,为丝状体病害的检测和预防提供有价值的信息。  相似文献   

宁波沿海陆源排污口放线菌(Actinomycetales sp.)的分布特点     

司开学  夏长革  王朝阳  张迪骏  何珊  周君  张红燕  韩姣姣  崔晨茜  董丽莎  苏秀榕 《海洋与湖沼》2016,47(2):400-406

利用454高通量测序技术对宁波沿海10个陆源排污口20个站位的放线菌的时空分布及5个工业排污口的放线菌的种类作了整体分析。成功鉴定出了83个属,84个种。研究结果显示:放线菌在陆源排污口的分布呈现季节性分布,从3月份到10月份,放线菌数量呈现先升高后下降的变化,5月份和8月份数量居高,在3月份和10月份偏低;在综合排污口(S4,S6,S8和S9)检测频次较高,在工业排污口(S1,S3,S5,S7和S10)检测频次居中,在市政排污口(S2)检出频次最低。不同类型的排污口,氨氮浓度的排出量不同,放线菌的种类和数量也不同。在5个工业排污口中,S7和S10检出的共同菌最多;在S7独自检出短双歧杆菌(Bifidobacterium breve)、长双歧杆菌(B.longum)和两岐双岐杆菌(B.bifidum),表明存在粪源污染物;在S5检出皱孢链霉菌(Streptomyces scabrisporus)和硫藤黄链霉菌(S.thioluteus),显示有石油降解物和重金属的污染。总体上看,放线菌数量在距排污口外50m处略高于排污口处。排放指标越相似,菌的种类越接近。  相似文献   

大黄鱼白细胞介素17受体E-like的分子特征及进化分析          下载免费PDF全文

丁扬  敖敬群  艾春香  陈新华 《应用海洋学学报》2016,35(1):107-115

白细胞介素17受体(Interleukin 17 receptor,IL-17R)家族与IL-17细胞因子家族介导的各类反应有着密切联系.IL-17RE-like(IL-17REL)是一类最新发现的IL-17受体,其结构与IL-17RE相似,但尚未发现其配体.本研究克隆得到大黄鱼(Larimichthys crocea)IL-17REL(Lyc IL-17REL)的全长c DNA,其开放阅读框全长1 659个核苷酸,推断可编码一个由552个氨基酸组成的蛋白,含有信号肽、胞外段、跨膜区和胞内段.与其他物种的IL-17REL相似,Lyc IL-17REL蛋白的胞外段具有一个保守的FN I-like结构域,而胞内段缺少IL-17受体家族保守的SEFIR(SEF and IL-17R)结构域.多序列比对分析表明Lyc IL-17REL与日本河豚(Takifugu rubripes)IL-17REL的氨基酸序列同源性最高,序列一致性可达57.0%.系统进化分析表明,脊椎动物的IL-17受体家族可分为2类,IL-17RA/RB/RD为一类,IL-17RC/RE/REL为一类.其中鱼类及高等脊椎动物的IL-17REL与IL-17RE亲缘关系最近,并且推测二者可能是由同一基因从硬骨鱼类之前的物种中分化而来.组织分布表明Lyc IL-17REL在所有被检测的组织中为组成型表达,在黏膜相关组织如小肠和鳃中的表达量最高.大黄鱼受嗜水气单胞菌(Aeromonas hydrophila)诱导刺激后,Lyc IL-17REL在其头肾及鳃中的基因转录水平均显著上调.这表明Lyc IL-17REL可能在细菌感染引起的免疫反应中起着重要作用.  相似文献   

南极青霉菌Penicillium sp.S-1-16摇瓶发酵条件的初步优化          下载免费PDF全文

叶科元 唐潮卢小玲  吴文惠刘小宇 《极地研究》2016,28(3):424-429

对一株具有细胞毒活性的南极青霉属真菌Penicillium sp.S-1-16进行发酵条件的初步优化。通过对基础发酵培养基、发酵温度及培养基配制用水的筛选,以次级代谢产物量为主要指标,同时参考生物量及细胞毒活性指标来进行初步优化,获得一个较优的摇瓶发酵条件:酵母提取粉0.3%,蛋白胨0.5%,麦芽糖0.3%,葡萄糖1%,蔗糖5%,自来水,初始p H=7.0,接种量15%,18℃,180 r·min-1发酵15 d。采用初步优化后的条件进行发酵,与初始发酵条件相比,其次级代谢产物量提高到568.75%,对A549肿瘤细胞的抑制作用增强至265%,并且对He La肿瘤细胞和SGC-7901肿瘤细胞的抑制率分别从0提高到48.19%和69.18%,效果显著,为获得菌株中活性次级代谢产物奠定了基础。  相似文献