三种裸腹溞的16S rDNA序列分析与系统分类探讨     

徐敏  邓道贵  张海军  王文平  晁秋杰 《湖泊科学》2015,27(2):305-310

为了检验已记录的3种裸腹溞(发头裸腹溞(Moina irrasa)、短型裸腹溞(Moina brachiata)、微型裸腹溞(Moina micrura))的系统分类,用试剂盒法分别提取3种裸腹溞的基因组DNA.利用特异性引物,通过PCR扩增了3种裸腹溞的16S r DNA部分序列,并与来自Gen Bank中每个种类相似度较高的裸腹溞属序列进行分析.结果表明,3种裸腹溞的平均种间相似度为88.7%,碱基中A+T含量均明显高于G+C含量.本研究的发头裸腹溞的16S r DNA序列与Gen Bank所下载的多刺裸腹溞(Moina macrocopa)的16S r DNA序列相似度为99%,遗传距离(K2P双参考模型)为0.5%,属种内范围;两个地区的短型裸腹溞测得的16S r DNA序列与Gen Bank下载的欧洲短型裸腹溞的16S r DNA序列序列相似度相对较低(88%~90%),遗传距离较大(13.2%~13.5%左右),已达到属内种间分化水平.基于16S r DNA构建的NJ树和贝叶斯树也支持以上结论.结果表明,本研究的发头裸腹溞可能为多刺裸腹溞,本研究用的短型裸腹溞与Gen Bank下载的欧洲短型裸腹溞已经达到种间分化的标准.由于缺乏物种形态资料和其他分子标记的对比,3种裸腹溞的分类地位还需进行更深入的探讨.  相似文献   

NOAA卫星沙尘暴光谱特征分析及信息提取研究   总被引：12，自引：5，他引：7  

郭铌  倾继祖 《高原气象》2004,23(5):643-647,i001,i002

通过对2000—2002年多次沙尘暴过程NOAA卫星AVHRR资料的分析,研究了沙尘、云、沙漠、戈壁、积雪、裸地、植被等不同目标物的光谱特性,发现沙尘暴在AVHRR-2中各通道均有不同程度的反映。1,2通道中沙尘的反射率较高(介于云和沙漠之间);4,5通道的亮温低于晴空地表高于云;在3通道中沙尘表现的很独特,其亮度温度为所有研究目标物中最高的,表明通道3包含较多的沙尘信息,AVHRR-3取代AVHRR-2后对监测沙尘有不利影响。在此基础上提出定量提取沙尘信息的两种沙尘判识指数,并利用沙尘判识指数成功地提取多次沙尘暴过程的沙尘信息。结果表明：利用多通道组合沙尘判识指数能够对沙尘信息进行有效提取。  相似文献   

Grain alignment in dense interstellar environments: spectropolarimetry of the 4.67-μm CO-ice feature in the field star Elias 16 (Taurus dark cloud)     

J. H. Hough  D. K. Aitken  D. C. B. Whittet  A. J. Adamson  A. Chrysostomou 《Monthly notices of the Royal Astronomical Society》2008,387(2):797-802

We present spectropolarimetry of the solid CO feature at 4.67 μm along the line of sight to Elias 16, a field star background to the Taurus dark cloud. A clear increase in polarization is observed across the feature with the peak of polarization shifted in wavelength relative to the peak of absorption. This shows that dust grains in dense, cold environments (temperatures ∼20 K or less) can align and produce polarization by dichroic absorption. For a grain model, consisting of a core with a single mantle, the polarization feature is best modelled by a thick CO mantle, possibly including 10 per cent water-ice, with the volume ratio of mantle to bare grain of ∼5. Radiative torques could be responsible for the grain alignment provided the grain radius is at least 0.5 μm. This would require the grain cores to have a radius of at least 0.3 μm, much larger than grain sizes in the diffuse interstellar medium. Sizes of this order seem reasonable on the basis of independent evidence for grain growth by coagulation, as well as mantle formation, inside dense clouds.  相似文献   

基于核酸适配体功能化石墨纳米颗粒荧光探针的17β-雌二醇快速检测方法     

朴云仙  祁小丽  王湘  康博泉  史玉玺  胡慧  杨悦锁 《吉林大学学报(地球科学版)》2019,49(4):1137-1144

为构建一种能够简单、快速、特异性检测复杂环境水体中雌激素污染的方法,利用石墨纳米颗粒作为荧光淬灭剂、核酸适配体作为识别元素、1-芘丁酸N-羟基琥珀酰亚胺酯作为异型双功能交联剂,构建了一种新型纳米荧光探针;并探究了构建荧光探针时核酸适配体初始投加量和荧光探针投加量对雌二醇检测的影响及最佳实验条件下检测雌二醇的效果和特异性。实验结果表明：核酸适配体能成功修饰在石墨纳米颗粒表面形成的稳定荧光探针;构建荧光探针时核酸适配体的最佳初始投加量为1.0 μmol/L;检测雌二醇时,荧光探针的最佳投加量为4 μg/mL;最佳实验条件下,相对荧光强度与雌二醇的质量浓度在50~800 ng/mL范围内成正比,最低检测限为34.5 ng/mL,且该荧光探针能实现对雌二醇的简单、快速、特异性检测。  相似文献   

Prevalence of Bacillus sp. among the biofilm forming community on Ti surface in marine environment     

PRIYA Chokkalingam  ARAVIND Ganessin  THILAGARAJ Wilson Richard 《海洋学报(英文版)》2017,36(6):89-94

Prevalence of bacterial species involved in biomineralization of manganese on titanium (Ti) surfaces in marine environment was revealed in this research work. This study involves one year sea water exposure of Ti and their periodical biofilm characterization was carried out to quantify the manganese oxidizing bacterial (MOB) presence in the biofilm formed on titanium surfaces. The total viable count study of Ti coupons exposed to sea water for one year resulted in 60% of the MOB in overall biofilm population. The biochemical characterization of MOB isolates were performed for the genus level identification of the seven bacterial isolates. Further, the seven strains were subjected to 16S rRNA gene sequencing. Evolutionary analysis was performed using MEGA 7 to obtain closely related strains within the groups. The manganese oxidizing ability of the bacterial isolates were determined with Leucoberbelin Blue Assay (LBB) and Atomic Absorption Spectroscopy studies (AAS). The results show that among the isolated marine MOB species, Bacillus sp. and Leptothrix sp. have the maximum Mn oxidizing property. The microtitre plate assay was performed to determine the biofilm forming ability of the isolated marine MOB species. All the results have confirmed the prevalence of Bacillus sp. among the biofilm colonizers on Ti surfaces when exposed in sea water.  相似文献   

一种基于16S rRNA基因检测海洋浮游细菌群落的微阵列基因芯片     

赵维  王敬敬  梁亚杰  黄志勇 《海洋学报(英文版)》2017,36(10):106-114

A better understanding of bacterioplankton community shifts following change in marine environments is critical to predict the marine ecosystem function. In order to get a snapshot of the microbial taxonomy profiling of a wide range marine area, a quick, convenient and low cost method would be favorable. In this study, we developed a 16S rRNA gene-based microarray using ARB software, which contained 447 probes targeting 160 families of marine bacteria. The specificity, sensitivity and quantitative capability of this microarray were assessed by single cloned16S rRNA genes. The reliability of this microarray was tested by eight environmental samples. The results showed that the microarray was specific, only 1.16% false results were detected in five single-clone hybridization tests. The microarray could detect DNA samples as few as 1 ng/μL and the signal intensity could reflect the relative abundance of the bacteria in the range of 1 ng/μL to 100 ng/μL of DNA concentration. Hybridization with environmental samples showed that it can discriminate bacterioplankton communities by sites and time. High throughput sequencing results from the eight samples confirmed the hybridization results. It indicated that this developed microarray could be used as a convenient tool to monitor the bacterioplankton community in marine environment.  相似文献   

致病性哈维氏弧菌:海洋寄生性纤毛虫的内共生细菌     

QIAO Ying  WANG Jun  MAO Yong  LIU Min  CHEN Ruanni  SU Yongquan  KE Qiaozhen  HAN Kunhuang  ZHENG Weiqiang 《海洋学报(英文版)》2017,36(10):115-119

哈维氏弧菌被观察到与海洋寄生性纤毛虫刺激隐核虫具有内共生现象,其作为一种致病性细菌,可导致感染刺激隐核虫的大黄鱼产生严重的继发性细菌感染。我们通过16s宏测序技术对刺激隐核虫的细菌群落进行鉴定,并通过标准的细菌培养方法分离鉴定出哈维氏弧菌。通过透射电镜和荧光原位杂交方法,在刺激隐核虫的细胞胞质中,均观察到内共生的哈维氏弧菌的存在;而在其细胞核中,则没有相关信号存在。哈维氏弧菌与刺激隐核虫的相关关系以及内共生的哈维氏弧菌对刺激隐核虫的影响作用,仍需要深入进行研究。  相似文献   

池塘养殖和海上吊笼养殖仿刺参肠道菌群结构对比分析   总被引：1，自引：0，他引：1       下载免费PDF全文

陆振  杨求华  黄瑞芳  林琪  何丽斌  葛辉  周宸  杜虹 《应用海洋学学报》2017,36(2):187-194

实验采用平板分离及16S r DNA序列分析法研究池塘养殖和海上吊笼养殖仿刺参(Apostichopus japonicus)的前肠、中肠和后肠菌群结构并进行对比分析.结果显示,从海上吊笼养殖的仿刺参的肠道内分离鉴定的240株菌株分属于3个门、11个属和34个种.从池塘养殖仿刺参的肠道内分离鉴定的211株菌株分属于3个门、11个属和49个种.两种养殖模式仿刺参肠道菌群结构存在较大差异,且同一仿刺参肠道各部分之间的菌群结构也存在较大的差异.海上养殖仿刺参的肠道优势菌群为弧菌属(Vibrio)、Formosa属、希瓦氏菌属(Shewanella),池塘养殖仿刺参的肠道内优势菌群为弧菌属(Vibrio)、芽孢杆菌属(Bacillus)、喜盐芽孢杆菌属(Halobacillus).两个菌群共有菌株有7个种,存在于在不同的肠道部位.两种养殖模式比较发现池塘养殖仿刺参的肠道菌群的丰富度大于海上吊笼养殖的仿刺参,且池塘养殖仿刺参肠道内芽孢杆菌(Bacillus)等益生菌的占比较高,海上吊笼养殖仿刺参分离得到较多的弧菌属(Vibrio)细菌.本研究可为南方仿刺参人工养殖中潜在益生菌的筛选提供基础资料.  相似文献   

黄淮海平原耕地转移对植被碳储量的影响   总被引：8，自引：0，他引：8  

姜群鸥  邓祥征  战金艳  刘兴权 《地理研究》2008,27(4):839-847

应用GLO-PEM模型和1988年NOAA/AVHRR遥感数据,估算了黄淮海平原植被净初级生产力(NPP),并根据NPP和植被凋落物产生量计算了不同土地利用类型的植被碳密度。通过对1988年与2000年土地利用图的叠置分析,统计了耕地与其他土地利用类型之间的转移量,并估算了耕地转移对植被碳储量的影响。研究发现,耕地转移对植被碳储量变化的影响在不同区域与不同土地利用类型上存在显著差异。1988~2000年间,耕地转移导致全区植被碳储量下降了0.24%,其中耕地转为建设用地是植被碳储量减少的主要原因。这一研究结论为正确把握耕地转移对区域植被碳储量的影响,并据此制订碳汇管理措施具有重要的参考价值。  相似文献   

Effects of exposure to four endocrine disrupting-chemicals on fertilization and embryonic development of Barbel chub (Squaliobarbus curriculus)     

NIU Cuijuan  WANG Wei  GAO Ying  LI Li 《中国海洋大学学报(英文版)》2013,12(3):491-499

The toxicities of 4 common endocrine-disrupting chemicals (EDCs), 17β-estradiol (E2), p,p′-dichlorodiphenyldichloro-ethylene (DDE), 4-nonylphenol (NP) and tributyltin (TBT), to sperm motility, fertilization rate, hatching rate and embryonic development of Barbel chub (Squaliobarbus curriculus) were investigated in this study. The duration of sperm motility was significantly shortened by exposure to the EDCs at the threshold concentrations of 10 ng L^?1 for E2 and TBT, 1 μg L^?1 for NP and 100 μg L^?1 for DDE, respectively. The fertilization rate was substantially reduced by the EDCs at the lowest observable effect concentrations (LOECs) of 10 ng L^?1 for E2 and TBT and 10 μg L^?1 for DDE and NP, respectively. Of the tested properties of S. curriculus, larval deformity rate was most sensitive to EDC exposure and was significantly increased by DDE at the lowest experimental level of 0.1 μg L^?1. Other EDCs increased the larval deformity rate at the LOECs of 1 ng L^?1 for E2, 10 ng L^?1 for TBT and 1 μg L^?1 for NP, respectively. Despite their decreases with the increasing EDC concentrations, the hatching rate and larval survival rate of S. curriculus were not significantly affected by the exposure to EDCs. The results indicated that all the 4 EDCs affected significantly and negatively the early life stages of the freshwater fish S. curriculus. Overall, E2 and TBT were more toxic than NP and DDE, while DDE might be more toxic to larval deformity rate than to other measured parameters. Thus, the 4 EDCs showed potential negative influences on natural population dynamics of S. curriculus. Our findings provided valuable basic data for the ecological risk assessment of E2, DDE, NP and TBT.  相似文献