Use of Sonication for Enhanced Sampling of Attached Microbes from Groundwater Systems     

Murray Close  Phil Abraham  Judith Webber  Eliza Cowey  Bronwyn Humphries  Graham Fenwick  Simon Howard  Kimberly Huynh  Travis Grace  Pierre-Yves Dupont  Louise Weaver 《Ground water》2020,58(6):901-912

The vast majority of microorganisms in aquifers live as biofilms on sediment surfaces, which presents significant challenges for sampling as only the suspended microbes will be sampled through normal pumping. The use of a down-well low frequency sonicator has been suggested as a method of detaching microbes from the biofilm and allowing rapid sampling of this community. We developed a portable, easy to use, low-frequency electric sonicator and evaluated its performance for a range of well depths (tested up to 42 m below ground level) and casing types. Three sonicators were characterized in laboratory experiments using a 1 m long tank filled with pea gravel. These included a commercially available pneumatic sonicator, a rotating flexible shaft sonicator, and the prototype electric sonicator. The electric sonicator detached between 56 and 74% of microbes grown on gravel-containing biobags at distances ranging between 2 and 50 cm from the sonicator. The field testing comprises of a total of 55 sampling events from 48 wells located in 4 regions throughout New Zealand. Pre- and post-sonication samples showed an average 33 times increase in bacterial counts. Microbial sequence data showed that the same classes are present in pre- and post-sonicated samples and only slight differences were seen in the proportions present. The sampling process was rapid and the significant increases in bacterial counts mean that microbial samples can be quickly obtained from wells, which permits more detailed analysis than previously possible.  相似文献   

Macrobenthic infaunal communities associated with deep‐sea hydrocarbon seeps in the northern Gulf of Mexico          下载免费PDF全文

Travis W. Washburn  Amanda W. J. Demopoulos  Paul A. Montagna 《Marine Ecology》2018,39(3)

There are thousands of seeps in the deep ocean worldwide; however, many questions remain about their contributions to global biodiversity and the surrounding deep‐sea environment. In addition to being globally distributed, seeps provide several benefits to humans such as unique habitats, organisms with novel genes, and carbon regulation. The purpose of this study is to determine whether there are unique seep macrobenthic assemblages, by comparing seep and nonseep environments, different seep habitats, and seeps at different depths and locations. Infaunal community composition, diversity, and abundance were examined between seep and nonseep background environments and among three seep habitats (i.e., microbial mats, tubeworms, and soft‐bottom seeps). Abundances were higher at seep sites compared to background areas. Abundance and diversity also differed among microbial mat, tubeworm, and soft‐bottom seep habitats. Although seeps contained different macrobenthic assemblages than nonseep areas, infaunal communities were also generally unique for each seep. Variability was 75% greater within communities near seeps compared to communities in background areas. Thus, high variability in community structure characterized seep communities rather than specific taxa. The lack of similarity among seep sites supports the idea that there are no specific infauna that can be used as indicators of seepage throughout the northern Gulf of Mexico, at least at higher taxonomic levels.  相似文献   

Combining pixel and object based image analysis of ultra-high resolution multibeam bathymetry and backscatter for habitat mapping in shallow marine waters     

Daniel Ierodiaconou  Alexandre C. G. Schimel  David Kennedy  Jacquomo Monk  Grace Gaylard  Mary Young  Markus Diesing  Alex Rattray 《Marine Geophysical Researches》2018,39(1-2):271-288

Habitat mapping data are increasingly being recognised for their importance in underpinning marine spatial planning. The ability to collect ultra-high resolution (cm) multibeam echosounder (MBES) data in shallow waters has facilitated understanding of the fine-scale distribution of benthic habitats in these areas that are often prone to human disturbance. Developing quantitative and objective approaches to integrate MBES data with ground observations for predictive modelling is essential for ensuring repeatability and providing confidence measures for habitat mapping products. Whilst supervised classification approaches are becoming more common, users are often faced with a decision whether to implement a pixel based (PB) or an object based (OB) image analysis approach, with often limited understanding of the potential influence of that decision on final map products and relative importance of data inputs to patterns observed. In this study, we apply an ensemble learning approach capable of integrating PB and OB Image Analysis from ultra-high resolution MBES bathymetry and backscatter data for mapping benthic habitats in Refuge Cove, a temperate coastal embayment in south-east Australia. We demonstrate the relative importance of PB and OB seafloor derivatives for the five broad benthic habitats that dominate the site. We found that OB and PB approaches performed well with differences in classification accuracy but not discernible statistically. However, a model incorporating elements of both approaches proved to be significantly more accurate than OB or PB methods alone and demonstrate the benefits of using MBES bathymetry and backscatter combined for class discrimination.  相似文献   

Long-Term Evaluation of Mulch Biowall Performance to Treat Chlorinated Solvents     

Kenneth L. Walker Jr.  Travis M. McGuire  David T. Adamson  R. Hunter Anderson 《Ground Water Monitoring & Remediation》2020,40(1):35-46

Permeable reactive barriers (PRBs), such as mulch biowalls, have been installed at numerous groundwater cleanup sites, and laboratory and field studies have demonstrated biotic and abiotic processes that degrade chlorinated volatile organic compounds (CVOCs) in groundwater passing through these engineered remedies. However, the longevity of mulch biowalls remains a fundamental research question. Soil and groundwater sampling at seven mulch biowalls at Altus Air Force Base (AFB) approximately 10 years after installation demonstrated the ongoing degradation of CVOCs. Trichloroethene was not detected in five of seven groundwater samples collected from the biowall despite upgradient detections above federal drinking water standards. Microbial sampling established the presence of key dechlorinating bacteria and the abundance of genes encoding specific enzymes for degradation, high methane concentrations, low sulfate concentrations, and negative oxidation-reduction potential, all indicative of highly reducing conditions within the biowalls and favorable conditions for CVOC destruction via microbial reductive dechlorination. High cellulose content (>79%) of the mulch, elevated total organic carbon (TOC) content in groundwater, and elevated potentially bioavailable organic carbon (PBOC) measurements in soil samples further supports an ongoing, long-lived source of carbon. These results demonstrate the ongoing and long-term efficacy of the mulch biowalls at Altus AFB. In addition, concentrations of bacteria, TOC, PBOC, and other geochemical parameters suggest a modest impact of the biowalls downgradient. The continued presence of CVOCs downgradient may be attributable to back diffusion from low-permeability shale. However, the biowalls continue to provide benefits by removing CVOCs in groundwater, thus reducing further CVOC loading to the downgradient, low-permeability strata.  相似文献   

Shock deformation confirms the impact origin for the Cerro do Jarau,Rio Grande do Sul,Brazil, structure     

Wolf Uwe Reimold  Alvaro Penteado Crsta  Maximilian Hasch  Astrid Kowitz  Natalia Hauser  Joana Paula Sanchez  Luiz Sergio Amarante Simes  Grace Juliana de Oliveira  Patrice T. Zaag 《Meteoritics & planetary science》2019,54(10):2384-2397

Cerro do Jarau is a conspicuous, circular morpho‐structural feature in Rio Grande do Sul State (Brazil), with a central elevated core in the otherwise flat “Pampas” terrain typical for the border regions between Brazil and Uruguay. The structure has a diameter of approximately 13.5 km. It is centered at 30^o12′S and 56^o32′W and was formed on basaltic flows of the Cretaceous Serra Geral Formation, which is part of the Paraná‐Etendeka Large Igneous Province (LIP), and in sandstones of the Botucatu and Guará formations. The structure was first spotted on aerial photographs in the 1960s. Ever since, its origin has been debated, sometimes in terms of an endogenous (igneous) origin, sometimes as the result of an exogenous (meteorite impact) event. In recent years, a number of studies have been conducted in order to investigate its nature and origin. Although the results have indicated a possible impact origin, no conclusive evidence could be produced. The interpretation of an impact origin was mostly based on the morphological characteristics of the structure; geophysical data; as well as the occurrence of different breccia types; extensive deformation/silicification of the rocks within the structure, in particular the sandstones; and also on the widespread occurrence of low‐pressure deformation features, including some planar fractures (PFs). A detailed optical microscopic analysis of samples collected during a number of field campaigns since 2007 resulted in the disclosure of a large number of quartz grains from sandstone and monomict arenite breccia from the central part of the structure with PFs and feather features (FFs), as well as a number of quartz grains exhibiting planar deformation features (PDFs). While most of these latter grains only carry a single set of PDFs, we have observed several with two sets, and one grain with three sets of PDFs. Consequently, we here propose Cerro do Jarau as the seventh confirmed impact structure in Brazil. Cerro do Jarau, together with Vargeão Dome (Santa Catalina state) and Vista Alegre (Paraná State), is one of very few impact structures on Earth formed in basaltic rocks.  相似文献   

Controls on Arctic glacier-fed river water temperature     

Christopher J. Mellor  Stephen J. Dugdale  Grace Garner  Alexander M. Milner 《水文科学杂志》2017,62(4):499-514

The impact of climate change on Arctic rivers is expected to be severe. There is therefore a need for greater understanding of Arctic river temperature processes. This study quantifies the spatio-temporal variability of water temperatures in the Kårsa River, Sweden. Water temperature was monitored over two summers within the main proglacial channel and within braids fed by different sources. Longitudinal and lateral temperature patterns were assessed in relation to prevailing hydro-meteorology. Temperature metrics in the main channel increased with distance downstream but were moderated by a large lake, while temperatures in the braids were dependent upon channel source. The high temperature standard deviation and inter-site differences within the braids highlight the importance of braided channels for creating thermal habitat heterogeneity. Temperatures were dependent on hydro-meteorological conditions, with sensitivity to air temperature maximized during cooler, rainy conditions. These results shed new light on Arctic river temperature patterns and their controlling processes.  相似文献   

A benchmark comparison of numerical methods for infinite Prandtl number thermal convection in two-dimensional Cartesian geometry     

B. J. Travis  C. Anderson  J. Baumgardner  C. W. Gable  B. H. Hager  R. J. O'Connell 《地球物理与天体物理流体动力学》2013,107(3-4):137-160

Abstract

A comparison is made between seven different numerical methods for calculating two-dimensional thermal convection in an infinite Prandtl number fluid. Among the seven methods are finite difference and finite element techniques that have been used to model thermal convection in the Earth's mantle. We evaluate the performance of each method using a suite of four benchmark problems, ranging from steady-state convection to intrinsically time-dependent convection with recurring thermal boundary layer instabilities. These results can be used to determine the accuracy of other computational methods, and to assist in the development of new ones.  相似文献   

Apparent redox potential discontinuity (aRPD) depth as a relative measure of sediment oxygen content and habitat quality     

Travis G GERWING  Alyssa M ALLEN GERWING  Diana JHAMILTON  Myriam ABARBEAU 《国际泥沙研究》2015,(1)

As hypoxic conditions spread in our oceans, indices that quickly and efficiently assess oxygen content in sediment pore water, and habitat quality are increasingly becoming desirable. Depth to the appa...  相似文献   

Buruanga peninsula and Antique Range: Two contrasting terranes in Northwest Panay,Philippines featuring an arc–continent collision zone     

Lawrence R. Zamoras  Mary Grace A. Montes  Karlo L. Queaño  Edanjarlo J. Marquez  Carla B. Dimalanta  Jillian Aira S. Gabo  Graciano P. Yumul Jr. 《Island Arc》2008,17(4):443-457

Alternating chert–clastic sequences juxtaposed with limestone blocks, which are units typical of accretionary complexes, constitute the Buruanga peninsula. New lithostratigraphic units are proposed in this study: the Unidos Formation (Jurassic chert sequence), the Saboncogon Formation (Jurassic siliceous mudstone–terrigenous mudstone and quartz‐rich sandstone), the Gibon Formation (Jurassic(?) bedded pelagic limestone), the Libertad Metamorphics (Jurassic–Cretaceous slate, phyllite, and schist) and the Buruanga Formation (Pliocene–Pleistocene reefal limestone). The first three sedimentary sequences in the Buruanga peninsula show close affinity with the ocean plate stratigraphy of the North Palawan terrane in Busuanga Island: Lower–Middle Jurassic chert sequences overlain by Middle–Upper Jurassic clastics, juxtaposed with pelagic limestone. Moreover, the JR5–JR6 (Callovian to Oxfordian) siliceous mudstone of the Saboncogon Formation in the Buruanga peninsula correlates with the JR5–JR6 siliceous mudstone of the Guinlo Formation in the Middle Busuanga Belt. These findings suggest that the Buruanga peninsula may be part of the North Palawan terrane. The rocks of the Buruanga peninsula completely differ from the Middle Miocene basaltic to andesitic pyroclastic and lava flow deposits with reefal limestone and arkosic sandstone of the Antique Range. Thus, the previously suggested boundary between the Palawan microcontinental block and the Philippine Mobile Belt in the central Philippines, which is the suture zone between the Buruanga peninsula and the Antique Range, is confirmed. This boundary is similarly considered as the collision zone between them.  相似文献   

Limits on the 2.2-μm contrast ratio of the close-orbiting planet HD 189733b     

J. R. Barnes  Travis S. Barman  L. Prato  D. Segransan  H. R. A. Jones  C. J. Leigh  A. Collier Cameron  D. J. Pinfield 《Monthly notices of the Royal Astronomical Society》2007,382(1):473-480

We obtained 238 spectra of the close-orbiting extrasolar giant planet HD 189733b with resolution   R ∼ 15 000  during one night of observations with the Near-Infrared High-Resolution Spectrograph (NIRSPEC), at the Keck II Telescope. We have searched for planetary absorption signatures in the  2.0–2.4 μm  region where H₂O and CO are expected to be the dominant atmospheric opacities. We employ a phase-dependent orbital model and tomographic techniques to search for the planetary absorption signatures in the combined stellar and planetary spectra. Because potential absorption signatures are hidden in the noise of each single exposure, we use a model list of lines to apply a spectral deconvolution. The resulting mean profile possesses a signal-to-noise ratio (S/N) that is 20 times greater than that found in individual lines. Our spectral time series thus yields spectral signatures with a mean S/N = 2720. We are unable to detect a planetary signature at a contrast ratio of  log₁₀( F _p/ F _*) =−3.40  , with 63.8 per cent confidence. Our findings are not consistent with model predictions which nevertheless give a good fit to mid-infrared observations of HD 189733b. The 1σ result is a factor of 1.7 times less than the predicted 2.185-μm planet/star flux ratio of  log₁₀( F _p/ F _*) ∼−3.16  .  相似文献