Association of triacylglyceride content and transcript abundance of genes involving in lipid synthesis of nitrogen deficient Phaeodactylum tricornutum     

张琳  韩吉昌  杨官品  朱葆华  潘克厚 《中国海洋湖沼学报》2014,32(2):397-402

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溶藻弧菌acfA基因克隆与生物信息学分析     

程海燕  庞欢瑛  鲁义善  简纪常  吴灶和  蔡双虎 《广东海洋大学学报》2014,(1):9-14

溶藻弧菌引起海水养殖产业弧菌病的主要病原,附着定植因子基因acfA是溶藻弧菌重要毒力基因之一,其表达产物是溶藻弧菌有效定植在宿主肠道上所必需的蛋白。根据弧菌属细菌acfA基因基因保守区设计引物,采用Touchdown PCR扩增acfA基因部分序列,Inverse PCR和Nested PCR扩增已知序列侧翼序列,成功克隆了溶藻弧菌acfA基因全长。克隆的acfA基因序列全长为743 bp,开放阅读框长度为648 bp组成,共编码215个氨基酸,在5′端上游未发现-35区和-10区序列。演绎的ACFA蛋白N端有18个氨基酸信号肽序列,表明该蛋白是分泌型蛋白;蛋白结构分析表明主要由α螺旋和不规则卷曲构成。BLAST分析表明,该蛋白氨基酸序列与其他弧菌相应蛋白同源性较高,是较保守的外膜蛋白。  相似文献   

鳗鲡目鱼类线粒体蛋白质编码基因易位及系统演化关系分析     

申欣  田美  孟学平  程汉良  阎斌伦 《海洋学报》2014,36(4):73-81

鳗鲡目鱼类线粒体基因组的基因组成较为保守,在58个线粒体基因组中,仅有3个物种存在基因数量的差异。在19个鳗鲡目鱼类线粒体基因组中存在主编码基因的重排。主编码基因的变异位点分析结果支持nad5、nad4和nad2基因作为cox1和lrRNA基因辅助的分子标记。鳗鲡科Anguillidae的20个种(亚种)聚在一起,强烈支持鳗鲡科为单系群(BPP=100)。鳗鲡科下属的3个类群(大洋洲类群、大西洋类群和印度洋-太平洋类群)也同时得到有力的验证(BPP均为100)。线鳗科Nemichthyidae和锯齿鳗科Serrivomeridae亲缘关系最近,二者聚类后,与鳗鲡科Anguillidae构成姊妹群(BPP=100)。在囊喉鱼亚目Saccopharyngoidei中,宽咽鱼科Eurypharyngidae与囊鳃鳗科Saccopharyngidae聚类(BPP=100),同时,单颌鳗科Monognathidae与月尾鳗科Cyematidae聚类(BPP=100),4个科聚在一支,支持囊喉鱼亚目为单系群(BPP=100)。在囊喉鱼亚目线粒体基因组中,3个物种(吞鳗Eurypharynx pelecanoides、拉文囊鳃鳗Saccopharynx lavenbergi和杰氏单颌鳗Monognathus jesperseni)存在主编码基因的重排。16种鳗鲡(细美体鳗Ariosoma shiroanago、短吻颈鳗Derichthys serpentinus、凯氏短尾康吉鳗Coloconger cadenati、鸭颈鳗Nessorhamphus ingolfianus、龟草鳗Thalassenchelys sp.、粗犁齿海鳗Cynoponticus ferox、百吉海鳗Muraenesox bagio、巨斑花蛇鳗Myrichthys maculosus、大吻沙蛇鳗Ophisurus macrorhynchos、几内亚副康吉鳗Paraconger notialis、哈氏异康吉鳗Heteroconger hassi、小头鸭嘴鳗Nettastoma parviceps、弱头鳗Leptocephalus sp.、斑点长犁齿鳗Hoplunnis punctata、尖吻小鸭嘴鳗Facciolella oxyrhyncha和星康吉鳗Conger myriaster),与鳗鲡目线粒体主编码基因的原始排列相比,共享nad6基因的易位。同时,基于线粒体基因组13个蛋白质编码基因构建的系统演化树,强烈支持这16个物种聚为一支(BPP=100)。然而,由此而带来的海鳗科Muraenesocidae、拟鯙科Chlopsidae和糯鳗科Congridae是否为单系群的问题,值得今后深入探究。  相似文献   

Phylogenomic analysis of transcriptomic sequences of mitochondria and chloroplasts for marine red algae (Rhodophyta) in China   总被引：1，自引：1，他引：0  

JIA Shangang  WANG Xumin  QIAN Hao  LI Tianyong  SUN Jing  WANG Liang  YU Jun  LI Xingang  YIN Jinlong  LIU Tao  WU Shuangxiu 《海洋学报(英文版)》2014,33(2):86-93

The chloroplast and mitochondrion of red algae （Phylum Rhodophyta） may have originated from different endosymbiosis. In this study, we carried out phylogenomic analysis to distinguish their evolutionary lin-eages by using red algal RNA-seq datasets of the 1 000 Plants （1KP） Project and publicly available complete genomes of mitochondria and chloroplasts of Rhodophyta. We have found that red algae were divided into three clades of orders, Florideophyceae, Bangiophyceae and Cyanidiophyceae. Taxonomy resolution for Class Florideophyceae showed that Order Gigartinales was close to Order Halymeniales, while Order Graci-lariales was in a clade of Order Ceramials. We confirmed Prionitis divaricata （Family Halymeniaceae） was closely related to the clade of Order Gracilariales, rather than to genus Grateloupia of Order Halymeniales as reported before. Furthermore, we found both mitochondrial and chloroplastic genes in Rhodophyta under negative selection （Ka/Ks〈1）, suggesting that red algae, as one primitive group of eukaryotic algae, might share joint evolutionary history with these two organelles for a long time, although we identified some dif-ferences in their phylogenetic trees. Our analysis provided the basic phylogenetic relationships of red algae, and demonstrated their potential ability to study endosymbiotic events.  相似文献   

西南印度洋深海热液硫化物区沉积物微生物群落结构和固氮基因多样性   总被引：1，自引：0，他引：1  

吴月红  曹佚  王春生  吴敏  Aharon Oren  许学伟 《海洋学报(英文版)》2014,33(10):94-104

A sediment sample was collected from a deep-sea hydrothermal vent field located at a depth of 2 951 m on the Southwest Indian Ridge. Phylogenetic analyses were performed on the prokaryotic community using polymerase chain reaction（PCR） amplification of the 16 S rRNA and nifH genes. Within the Archaea, the dominant clones were from marine benthic group E（MBGE） and marine group I（MGI） belonging to the phyla Euryarchaeota and Thaumarchaeota, respectively. More than half of the bacterial clones belonged to the Proteobacteria, and most fell within the Gammaproteobacteria. No epsilonproteobacterial sequence was observed. Additional phyla were detected including the Actinobacteria, Bacteroidetes, Planctomycetes, Acidobacteria, Nitrospirae, Chloroflexi, Chlorobi, Chlamydiae, Verrucomicrobia, and candidate divisions OD1, OP11, WS3 and TM6, confirming their existence in hydrothermal vent environments. The detection of nifH gene suggests that biological nitrogen fixation may occur in the hydrothermal vent field of the Southwest Indian Ridge. Phylogenetic analysis indicated that only Clusters I and III NifH were present. This is consistent with the phylogenetic analysis of the microbial 16 S rRNA genes, indicating that Bacteria play the main role in nitrogen fixation in this hydrothermal vent environment.  相似文献   

Cloning and expression analysis of the chloroplast fructose- 1,6-bisphosphatase gene from Pyropia haitanensis     

XIAO Haidong  CHEN Changsheng  XU Yan  JI Dehu  XIE Chaotian 《海洋学报(英文版)》2014,33(4):92-100

Fructose-1,6-bisphosphatase(FBPase) is one of the key enzymes in Calvin circle and starch biosynthesis. In this study, the full-length of cpFBPase gene from Pyropia haitanensis was cloned by using rapid amplification of cDNA ends(RACE) technology. The nucleotide sequence of PhcpFBPase consists of 1 400 bp, including a 5′ untranslated region(UTR) of 92 bp, a 3′?UTR of 69 bp, and an open reading frame(ORF) of 1 236 bp, which can be translated into a 412-amino-acid putative peptides with a molecular weight of 44.3 kDa and a theoretical pI of 5.23. Multiple sequence alignment indicated that the protein belonged to the chloroplast FBPase enzyme. Phylogenetic analysis showed that the protein assembled with the cpFBPase of a thermal tolerant unicellular red micro-algae Galdieria sulphuraria. Expression patterns analyzed by qRT-PCR revealed that the expression of PhcpFBPase gene in the thallus phage was 7-fold higher than in the conchocelis phage, which suggested the different mechanisms of inorganic carbon utilization among the different life phages of P. haitanensis. And the different response modes of PhcpFBPase mRNA levels to high temperature and desiccation stress indicated that PhcpFBPase played an important role in responsing to abiotic stress.  相似文献   

基因转移技术简介     

喻达辉 《广东海洋大学学报》2000,20(3):80-86

应用物理、化学或 (和 )生物学等技术和方法将外源基因转移到受体菌或细胞内 ,并使之在细菌或细胞内实现转入基因的扩增和表达称基因转移技术。1　基因转移的物理学方法1 .1　显微注射法应用玻璃显微注射仪器 ,在显微镜下将外源 DNA直接注射入靶细胞的核内。该法的受体细胞主要是体积较大的受精卵细胞 ,是制备转基因动物的常用技术之一。Gordon1 980年报道了用显微注射制作转基因小鼠 ,在出生的 78只小鼠中 ,用 Southern法检测有 2只为阳性 [1]。可惜的是未得到活的转基因小鼠。 1 982年 Palmiter报道了将大鼠的生长激素基因用显微注射法…  相似文献   

野生二粒小麦 Triticum dicoccoides抗杀锈病基因 YrH52分子定位的初步研究(英文)     

PengJ.H.  FahimaT.  RoderM.S.  LiY.C.  DahanA.  GramaA.  NevoE. 《广东海洋大学学报》1999,(4)

主要对以色列野生二粒小麦赫尔蒙种群中分离获得的一个抗条锈病基因进行了分子定位研究 ,将源于赫尔蒙山具抗杀锈病的种系 T.dicoccides H52与普通的栽培种 Langdon进行杂交并创建了 F2 代遗传图。研究发现 H52种系抗条锈病的能力由一种显性基因控制 ,将其暂定名为 Yr H52。从 1 2 0个微卫星标记中 ,已经检测到来自亲本 91 %的多态性 ,而且从其中 56个微卫星分子标记中产生了 79个分离的位点 ,有 9个位点显示出了与 Yr H 52基因连锁 ,其重组率 0 .0 2～ 0 .3 5,遗传距离 2 .0 0～ 4 3 .3 7cm之间 ,L OD值 3 .56～ 54.2 2。由 1 0个微卫星位点和 Yr H52构建的染色体 1 B遗传图 ,其图距全长为 1 0 1 .5cm。Yr H52基因位于 Xgwm2 64 a和 Xgwm2 64 c之间 ,且与 Xgwm2 64 a、Xgwm1 8紧密连锁 ,两侧依次分别与 Xgwm1 3 1 a、Xgwm63 6b、Xgwm2 64 c、Xgwm4 0 3 a、Xgwm1 53、Xgwm550 a和 Xgwm1 2 4连锁。同时 ,Yr H52也与 REL P标记物 N or1紧密连锁 ,图距 1 .4 cm,L OD2 9.62。这显然与野生二粒小麦另一个抗条锈病基因 Yr1 5不同 ,研究证明 Yr1 5与 N or1图距是 1 1 .0 cm。  相似文献   

欧洲鳗鲡肝肾病病原菌的分离与鉴定   总被引：1，自引：0，他引：1  

吴斌  樊海平  曾占壮  张新艳  王凡 《中国海洋大学学报(自然科学版)》2010,40(11)

患肝肾病的养殖欧洲鳗鲡(Anguilla anguilla)出现肝、肾肿大,且肝脏具白色溃疡灶的症状。从肝脏中分离、纯化到优势细菌,定名AL60306NA1。人工感染试验证实:向欧洲鳗鲡腹腔内注射1.0×108cfu/mL菌株悬液,实验鱼死亡率达100.0%;注射1.0×107cfu/mL,死亡率为60.0%;形态学观察、API20E细菌鉴定试剂盒鉴定实验证明菌株AL60306NA1有动力、拥有革兰氏反应阴性、氧化酶阴性、H2O2酶阳性、兼性厌氧、发酵葡萄糖产酸产气、不发酵蔗糖和蜜二糖及L一阿拉伯糖、赖氨酸脱羧酶阳性、柠檬酸盐弱阳性、产生硫化氢和吲哚、MR阳性和典型的β-溶血等特征;16S rRNA特异性基因分析鉴定实验说明克隆的AL60306NA1 16S rRNA基因部份序列为1507bp、与迟缓爱德华氏菌(AB050829.1)的同源性达99.7%。综合上述结果,确定该菌株为养殖欧洲鳗鲡肝肾病的病原菌,并鉴定为迟缓爱德华氏菌(Edwardsiella tarda)野生型。用菌株AL60306NA1感染小白鼠实验测定该菌对小白鼠的LD50为7.1×105cfu/mL,同时自该菌株PCR扩增到长度约1000bp的溶血素基因特异性片段,结果表明菌株AL60306NA1有一定的致病力。  相似文献   

Analysis on promoter elements of cpc operon from Arthrospira platensis     

LU Yongzhong  ZHANG Xuecheng 《海洋学报(英文版)》2008,27(1):85-91

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